pbdc1 (pbdc1,LOC107678025,LOC107687677,LOC107705089)


Basic Information

Item Value
gene id pbdc1
gene name pbdc1,LOC107678025,LOC107687677,LOC107705089
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19369830 ~ 19375335 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942743.2
GAGTGGGCTTTTCCAGGCAGCTGGCCCTTTAAGAGCCACGCGTCACTAATCATTTCCGGGTAAAAGGGCATCAACATGGACACGGGAGAAGTCCTCGCCTCTCTGGGTGTGGAAGGAGCTGCAGCCGCGGCACATGCGCTCTCGCTCCCCGCCGAGGCCTACGGAAATGACGCTCAGCTGGAGGTGATGTGGGCGATGAAGGCCTACAATCATGCAGAAGTTTACTTCAATCTCATTTCTTCTGTGGACCCAAAATTTCTGAAACTCACAAAAACAGACGACGTGATCTATTCCAAGTTTAGGGAAGACTTTCCGGACTTTAATATCAAGATTCTGGATCCAGAACTGCTCAAGTCGGCAGAAGCGAAAGAGAAATGGAGGCCCTTTTGTAACCACTTTGAAGGCCTGGTCGAAGACTTTAACTACGGTACGTTACTGCGTCTAGACTGCGAGAAGGACTACACAGAAGAGAACACGATATTCGCCACCAGAATCCAATTTTTTGCCATTGAGATTGCGAGAAACCGAGAAGGTTACAACGATGCTGTGCACAACGCCAGTGTGAAGGCGAAACAGCAGAAGAAAGAGCAGAGTTAACACCCGCAGCAGCACGCCTCAGTGGCcttgttttcacattttacgCCTTGTTTCTGTTGCAAGTCTGACATTCTTATGATATGATTCATTTCACATAATGGAGAAAAATACAATTTTGAGGCATAGAAACTGAAACTAAACTCCTCAATACAAGtatttaaacacattatatatCTGTAATTAAAAGTTTTTCAGTGTGgtaatgtattttgtttttgttttgcttctttcttgTCTTTATAACAAATAAACCCCCAAACAGGGTCtcagtatttaa

Function

symbol description
pbdc1 Is expressed in several structures, including immature eye; mesoderm; midbrain; musculature system; and sensory system. Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1).

NR:

description
PREDICTED: protein PBDC1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942743.2 True 874 mRNA 0.44 6 19369830 19375335

Neighbor

gene id symbol gene type direction distance location
sfrp1b NA coding upstream 94977 19258631 ~ 19274853 (+)
loxl2a loxl2,LOC108440557 coding upstream 141907 19182347 ~ 19227923 (+)
si:ch211-113d22.2 LOC108276771 coding upstream 190982 19173255 ~ 19178848 (+)
tacc1 LOC108276770 coding upstream 201238 19137237 ~ 19168592 (+)
ddhd2 LOC108276773 coding upstream 250717 19103193 ~ 19119113 (+)
LOC113544087 NA coding downstream 48812 19424147 ~ 19440355 (+)
LOC117599384 NA coding downstream 74470 19449805 ~ 19468222 (+)
LOC117599385 NA coding downstream 109937 19485272 ~ 19489094 (+)
LOC117599386 NA coding downstream 155542 19530877 ~ 19540276 (+)
LOC113544003 NA coding downstream 165043 19540378 ~ 19549194 (+)
G271884 NA non-coding upstream 33950 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 140407 19229061 ~ 19229423 (+)
G271576 NA non-coding upstream 357598 19011175 ~ 19012232 (+)
G271571 NA non-coding upstream 406050 18963355 ~ 18963780 (+)
G271569 NA non-coding upstream 408275 18961302 ~ 18961555 (+)
G271923 NA non-coding downstream 107162 19482497 ~ 19484904 (+)
LOC113544143 NA non-coding downstream 441843 19817178 ~ 19825232 (+)
G272246 NA non-coding downstream 590792 19966127 ~ 20008197 (+)
G272249 plpp1 non-coding downstream 848142 20223477 ~ 20226693 (+)
G272305 NA non-coding downstream 864559 20239894 ~ 20240346 (+)
G271863 NA other upstream 125925 19241709 ~ 19243905 (+)
G271406 NA other upstream 962332 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 2268761 17099096 ~ 17101069 (+)
trnam-cau_42 NA other upstream 2280452 17089307 ~ 17089378 (+)
trnar-ccu_13 NA other upstream 2280531 17089227 ~ 17089299 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other downstream 757 19376092 ~ 19414627 (+)
LOC113544004 LOC108276941 other downstream 113871 19489206 ~ 19520777 (+)
LOC113543969 NA other downstream 407092 19782427 ~ 19786831 (+)
G272180 NA other downstream 418577 19793912 ~ 19825232 (+)
LOC117599326 NA other downstream 450627 19825962 ~ 19830268 (+)

Expression


Co-expression Network