hsdl2 (hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110)


Basic Information

Item Value
gene id hsdl2
gene name hsdl2,LOC107558693,LOC107744249,LOC107658673,LOC107685110
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 24103073 ~ 24112853 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU324879
CTGGTGAAGTGTGCTAAagggcagcagcagcagtgacagtgagctgtgtgtgtgtgtgcgtgtgtgtgtgtgtggagttaaAGAGAAGTTTACAGAGTTTCAGCACTAATTCTGATCAACTCTAAACTCTGAAAGCGGTGTGATTAAGTGCACAATGCTGCAGAACACAGGAAAGCTGTCCGGTTGCACCCTGTTCATCACCGGAGCGAGTCGAGGCATCGGAAAAGCCATCGCTCTGAAAGCTGCCCGAGACGGTGCCAACGTGGTGATCGCAGCCAAGACCGCCGAGTCGCACCCCAAACTGCCCGGAACCATCTACACGGCCGCCGAGGAGAGTAAGAACCTTTTAATCCAAACAGCGTCTCAGTCACGGTGATGTGGCTGAATCTGCAATCCAGcaatttttaaagataaataaattcttACTCACAGcacagattgttttttttttttttattattattatttctataaccTACACTACAATATCTGCTaacaattttcttatttttatccATCATGAAAAAGACCCAACTTAAAGTCTTGAGCTGTCAGAATGAATTTCACTCTTTTACTCCACTAGTcaattgttgttattattattattattattattattattattattaaaaaataatgaaccaGTCAAGTTCTGAGACCAGCTCAGTGGGTgcctaaacttttgcacatgcttCATTTATGACTTTATATTGTTCAATTTGTTCAATTCAgcaaataactaataaatgttatttatttatttatttattcattcattcatttgtttatttattttgggtaGAGGTGCCGAAACTTTTGCACACATGTCCAAAGGCAAAATAGTcacacataaatgtaaattttcatGCTCTGCTTTCAGTTGCATATTGT
>XM_026942828.2
ACCGGAAGTGAAGGCGCTGGTGAAGTGTGCTAAagggcagcagcagcagtgacagtgagctgtgtgtgtgtgtgcgtgtgtgtgtgtgtggagttaaAGAGAAGTTTACAGAGTTTCAGCACTAATTCTGATCAACTCTAAACTCTGAAAGCGGTGTGATTAAGTGCACAATGCTGCAGAACACAGGAAAGCTGTCCGGTTGCACCCTGTTCATCACCGGAGCGAGTCGAGGCATCGGAAAAGCCATCGCTCTGAAAGCTGCCCGAGACGGTGCCAACGTGGTGATCGCAGCCAAGACCGCCGAGTCGCACCCCAAACTGCCCGGAACCATCTACACGGCCGCCGAGGAGATTGAAGCGGCAGGAGGAAAAGCTCTGCCGTGTATCGTGGACGTTCGTGATGAGAAGCAGGTGAGCGAGGCGGTGGAGAACGCCGTGCAGAAATTCGGAGGGATCGACATCGTGGTGAACAACGCCAGCGCCATTAACCTGACGGGAACGCTGGACACGCCCATGAAGAAAGTGGACCTCATGCTGGGCATCAATCTGAGAGGAACGTATCTGACGTCTAAACTGTGCATCCCGCATCTGCTAAAGAGTAAAAACCCTCACATCCTCAACCTCAGTCCTCCTCTCAACCTCAATCCCATCTGGTTTAAGAACCACACAGcttacACCATGGCCAAATACGGCATGTCCATGTGTGTCCTCGGGATGGCTGAAGAATTCCGTGGATCCATCGCTGTTAATGCGCTATGGCCTCGTACAGCCATTCAGACGGCGGCGATGGAGATGCTCGGGGGGTCAGGAGTGGAGAAACAGTGCAGGAAGGTGGACATCGTGGCCGACGCTGCTTACGCCATCCTCAACAAACCCGTCAGCTACACGGGACACTTCGCCATAGACGAGGACATCCTCAGGAAGGAGGGCGTTAAAGACTTTGACGTGTATGCGGTGTATCCAGGTCATCCACTGCTTCCTGACTTCTTCCTGGATGAAGATCCCGAGACACTCAAGAAGCAGATGCAGGATCACGGTGCCACTCCTGCTTTCCAGGCAGAAAAAACGAGTGCAGAAGCCTCCTCCGGCCCCATCGCTGATACGTTTACTGTGATTAAAGGTGTGATCACCCCCGAGGTGGTCAAATCCACACAGGGGATCTACAGATTTGAGCTGTCTGGCGATCATGCTGGAGTTTGGTACATCGACATGAAGAATGGTGCAGGTGCAGCAGGAAGTGGAGAACCTCCAGTTAAAGCAGATGTGGAGATGAGTTTGGACAGTGACGACTTCATCAAGATGTTCACAGGGAAGTTAAAGCCCACGATGGCCTTCATGTCCGGGAAGCTGAAGATTAAAGGTGACATGGCTCTGGCCATCAAAATGGAGAAGATGATGGTGCTGATGAACAAGTCCAAGCTGTAATCAGAAACGTTCTCCTGCGTTCAGTAAAGCTCGAGTCTGTAACAGTCCGATCTCAGTCACCGTGTCTGATGCGACTTCAGACACTTTCTTATTTTCATACAGATTCGTCCTGGTTTCCTTTTTTATAGATAATATAACACTATAGAAAAGaaacagctgagtgcaaaagtttgcacactcACACCGTTACTGTGTGTTCAGTTTCACAGGCGATCGTTCAGTTAGTGTGTTACCATATTAACTgtggaaaaaattaaaataatatttctgaa

Function

symbol description
hsdl2 Predicted to enable oxidoreductase activity. Predicted to be located in peroxisome. Predicted to be active in mitochondrion. Orthologous to human HSDL2 (hydroxysteroid dehydrogenase like 2).

NR:

description
LOW QUALITY PROTEIN: hydroxysteroid dehydrogenase-like protein 2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005777 peroxisome cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0032934 sterol binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU324879 False 891 TUCP 0.38 2 24103089 24104595
XM_026942828.2 True 1696 mRNA 0.51 11 24103073 24112853

Neighbor

gene id symbol gene type direction distance location
ugcg ugcg,LOC107571241,LOC107558686,LOC107713309,LOC107658668 coding upstream 92023 23971438 ~ 24011050 (+)
ambp ambp coding upstream 257678 23835167 ~ 23845395 (+)
ptgdsa lcn2 coding upstream 271548 23815676 ~ 23831525 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding upstream 293244 23789432 ~ 23809829 (+)
swi5 swi5 coding upstream 316290 23781356 ~ 23786783 (+)
LOC113544070 kiaa1958,LOC107683261,LOC106568575 coding downstream 120907 24233760 ~ 24252068 (+)
cops4 cops4,csn4,LOC107685106,LOC107558694 coding downstream 163229 24276082 ~ 24296725 (+)
cwc27 cwc27,LOC107744252,LOC107713303 coding downstream 197178 24310031 ~ 24359123 (+)
ppwd1 ppwd1 coding downstream 344183 24457036 ~ 24465100 (+)
nln nln,LOC107743138 coding downstream 391010 24503863 ~ 24525223 (+)
G274239 NA non-coding upstream 156566 23945616 ~ 23946507 (+)
G274193 NA non-coding upstream 233876 23868854 ~ 23869197 (+)
G274192 NA non-coding upstream 242370 23859824 ~ 23860703 (+)
G274186 NA non-coding upstream 250855 23851997 ~ 23852218 (+)
G274161 NA non-coding upstream 425846 23675643 ~ 23677227 (+)
G274431 NA non-coding downstream 11883 24124736 ~ 24125213 (+)
G274457 lin54 non-coding downstream 145054 24257907 ~ 24261576 (+)
G274583 NA non-coding downstream 290170 24403023 ~ 24491201 (+)
G274624 NA non-coding downstream 378562 24491415 ~ 24491856 (+)
G274639 NA non-coding downstream 424277 24537130 ~ 24537736 (+)
cdc37l1 LOC108276758,LOC108433523 other upstream 162941 23937978 ~ 23940132 (+)
LOC113543986 rabgap1,LOC107686418,LOC107744072 other upstream 716966 23281561 ~ 23386107 (+)
rc3h2 rc3h2,LOC108276736,LOC107595546,LOC106561687 other upstream 828420 23244560 ~ 23274653 (+)
lhx6 lhx6,LOC107597616,LOC107685129 other upstream 957506 23049812 ~ 23145567 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other upstream 1437503 22622428 ~ 22665570 (+)
LOC117599389 NA other downstream 113301 24226154 ~ 24232819 (+)
trappc13 trappc13,LOC107667267,LOC107726564 other downstream 367746 24480599 ~ 24498642 (+)
erbin erbin,erbb2ip other downstream 417125 24529978 ~ 24639642 (+)
zfand5b zfand5,LOC108277070,LOC108428885,LOC107742939,LOC107726558,LOC107705050,LOC107667265 other downstream 487009 24599862 ~ 24658701 (+)

Expression


Co-expression Network