etf1b (etf1,LOC108437808,LOC108277127)


Basic Information

Item Value
gene id etf1b
gene name etf1,LOC108437808,LOC108277127
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1848341 ~ 1855905 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026943941.2
cccccacacacacacacacctcccagcCGCACGTGAGCCTCTAGTGAACCTCCACGCGCAGCGAGAACAAACCGGTTGCTAACGGCTTAAACGTCACAGAAACTCGATCCTGATAGAACGCGGGGGAAAGATGGCGGACGACCCGAGCGCTGCGGACAGGAACGTGGAAATCTGGAAGATTAAGAAGTTGATCAAAAGCCTTGAAGCAGCCAGAGGGAATGGCACCAGTATGATTTCCCTCATCATCCCCCCGAAGGACCAGATCTCCCGTGTGGCTAAGATGCTGGCGGACGAGTTCGGCACGGCGTCCAACATTAAGAGCAGAGTGAACCGACTGTCTGTGCTGGGAGCCATCACTTCAGTACAGCAGAGACTCAAACTCTACaacaaggTGCCCCCCAATGGCCTGGTGGTGTACTGCGGAACCATCATGACGGAGGAGGGCAAAGAGAAGAAAGTCAACATCGACTTTGAGCCGTTCAAGCCAATCAACACGTCCCTGTATTTATGCGACAACAAGTTTCACACagagGCTCTTACCGCATTGCTCTCGGACGACAGCAAGTTCGGATTTATCGTGATCGACGGCAGTGGCGCTCTCTTCGGAACTCTGCAAGGCAACACGAGAGAGGTTCTGCACAAATTCACAGTGGACCTGCCGAAAAAGCACGgacgAGGAGGTCAGTCCGCCCTGCGATTCGCTCGCCTGAGGATGGAGAAAAGACACAACTACGTGAGGAAGGTGGCGGAGACAGCCGTGCAGCTGTTCGTCTCCAACGACAAGGTCAACGTCGCCGGGATGGTCCTCGCCGGATCAGCCGACTTTAAAACCGAGCTCAGCCAGTCGGACATGTTCGACCCGAGGTTACAAGCCAAGGTGCTGAAACTGGTGGACATTTCTTATGGAGGAGAGAACGGATTCAATCAGGCGATCGAACTGTCGGCCGAGGTGCTCTCCAACGTCAAATTCATTCAGGAGAAGAAGCTGATAGGACGCTACTTTGACGAGATCAGTCAGGACACGGGGAAGTACTGTTTCGGAGTCGAGGACACGCTCAAAGCTCTGGAGATGGGAGCCGTGGAGATTCTAATCGTCTACGAGAACCTGGACACCATGCGCTACGTACTACGCTGCCACGGAGCAGAGGGCAGTGGGCCTGAaaatgATGAGAAGACACTATATTTGACACCAGAGCAGGAGAAGGATAAGTCTCACTTCACAGACAAAGAGACAGGGCAGGAGCACGAGCTCTTAGAGAGCATGCCGCTGCTCGAGTGGTTCGCCAACAACTACAAGAAATTCGGGGCTACGCTGGAGATCGTGACGGACAAAAGTCAGGAGGGCTCGCAGTTTGTGAAGGGCTTCGGCGGGATCGGGGGAATTTTGCGATACAGGGTGGATTTCCAGGGCATGGACTATCAGGGAGAAGACGAGGAGTTGTACGACTTGGATGACTACTAGGTAGTCGTGACTGATGAACGGAGAAATTTAGGATTTCCCCTTTTACAACTCTGCAGACAAACGGGGAAGGAAAAGATGGTGAATCAGCGACGAGAGGAACGATTTGTAAGAGCGACCTTAAACGCAGTGACCGAATGGAGCTGAGTGTGTTTTGCTCCTCGACACGTCATTAACACGTCACACAGAAACAGTACGGACACATGAGGAAGTCCTCCGGTCGTGCGCCATTTCTCAAGCCTCCTTTTTTACTGACTCCTGCTGCTACTTTATGAGTTCGTGGCATTTTTTAATAACGTAGATGAAAAGCAGAGGGGATTAACCGTGTGCCGCTGCCTCAAGCTCATCGTCCAGACCTGCgtttctttcatttctgctgCGTATCAATCTCTGAGCCGGTTAAATCTCTGTGAAGGACCATCGCCTAGCTGGATCGCCTCTTCGTACTGCTGAAGACAAAGTGTGTCTCGCTTTAGCCTTTAGGAAACATCCCAAACTGTTTGAGTGCCTGAAAAGTTGAAATCGGTGAAACACGACTGCGCAGTTCACCCAGTTCTGAACTCGGGTGGAGTTTTAATCTGTGATTTGGATTTAAGAGCTGTGAGCTCATATTTCCTAAACCGCAAGCTGGATTAGTGACATTATTCGCGCATGAGAACACCAGATCACACTGGAAGGACTAAAATTGAGGATTTTTCATATTCCACTTCCTGCCCTTCCACATCCAGTCTATCGAAGGGCGGATttggttttaaaatttaaaaaaggacatATGTGACCTTATCGCTCTCATTCAGTCCTTATTCTGATACACTAGGCAGCAGGCAAACCCCATTTATAGAGTCTAatgagaaaatacacacacacacacacacacacacacaacacacacaaaggatTCTTTCTATTTTAACAAGTATTTCCTGTATTTTCTCATCTCCGTGCCTAATCCATTGATATTTTGTATAAATCATTTGTTACACGAGGTCACAGATATTAAACGTTCTCATCGTTTGCaca

Function

symbol description
etf1 Enables sequence-specific mRNA binding activity and translation release factor activity. Involved in regulation of translational termination. Acts upstream of or within protein methylation and translational termination. Located in cytoplasm.

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG:

id description
K03265 ETF1, ERF1; peptide chain release factor subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026943941.2 True 2479 mRNA 0.50 11 1848341 1855905

Neighbor

gene id symbol gene type direction distance location
fbxw11b fbxw11,fbxw11b,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099 coding downstream 1510 1830087 ~ 1846831 (-)
LOC113544777 LOC108276596 coding downstream 40431 1800319 ~ 1807910 (-)
LOC113544752 LOC108276668,LOC108276667 coding downstream 49608 1792343 ~ 1798733 (-)
LOC113544779 NA coding downstream 56547 1782495 ~ 1791794 (-)
zgc:123181 NA coding downstream 59897 1787476 ~ 1788444 (-)
LOC113544884 trpc7a,trpc7,LOC108277129,LOC108437819,LOC107677994,LOC107552051,LOC107720592,LOC105905985,LOC105029259 coding upstream 2123 1858028 ~ 1866859 (-)
LOC117599398 LOC108276673 coding upstream 285322 2141227 ~ 2142330 (-)
gramd1ba LOC108277131,LOC108433258 coding upstream 302959 2158864 ~ 2232784 (-)
LOC113544897 LOC108276559,LOC108433260,LOC107730975,LOC107679534,LOC107688917,LOC107583395,LOC107758678,LOC107565277 coding upstream 384986 2240891 ~ 2285075 (-)
smfn rexo2,LOC107730958 coding upstream 448336 2304241 ~ 2309023 (-)
G261809 NA non-coding downstream 231317 1534239 ~ 1617024 (-)
LOC117599322 NA non-coding downstream 397751 1442759 ~ 1450590 (-)
G261784 NA non-coding downstream 423992 1423897 ~ 1424349 (-)
G261780 NA non-coding downstream 428135 1419971 ~ 1420206 (-)
G261779 NA non-coding downstream 428576 1419183 ~ 1419765 (-)
G261893 NA non-coding upstream 190 1856095 ~ 1856308 (-)
LOC117599368 NA non-coding upstream 11899 1867804 ~ 1870920 (-)
G262033 NA non-coding upstream 194130 2050035 ~ 2093935 (-)
LOC113544895 NA non-coding upstream 293748 2149653 ~ 2156552 (-)
G262144 NA non-coding upstream 335267 2191172 ~ 2191383 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 67934 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 437402 1265452 ~ 1410939 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 735948 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 815806 981406 ~ 1032535 (-)
si:ch73-1a9.3 NA other upstream 823770 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 856537 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1109750 2965655 ~ 2968182 (-)
akap1a NA other upstream 1711514 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 2197084 4052989 ~ 4066383 (-)

Expression


Co-expression Network