G305734


Basic Information

Item Value
gene id G305734
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11129288 ~ 11129487 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362383
GTcagcatgtgtgtctgtgtgtgtgtcttgtggaATCAGAGCCCACTTGATTGTTATTCATCACTGTTTAATACTcatgatgaatttttttttattaggaaatCAATACATTTGCACACTTATTTTAATATGCGCTCCTAGTTACTGGGCTTTTGATGTTTTGCTTTTAGTTTGATTTGCAATGAATACCGCTGTCATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU362383 True 200 lncRNA 0.35 1 11129288 11129487

Neighbor

gene id symbol gene type direction distance location
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding upstream 22123 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding upstream 42595 11079081 ~ 11086693 (+)
ppcs ppcs coding upstream 65187 11061008 ~ 11064101 (+)
mon1bb LOC108255044,LOC107564673,LOC107727858,LOC108444170,LOC107691359,LOC107749456,LOC107685668 coding upstream 839473 10280520 ~ 10289815 (+)
gnl3l gnl3l coding upstream 990402 10102314 ~ 10138886 (+)
map1lc3a map1lc3a,LOC107551126 coding downstream 94661 11224148 ~ 11235261 (+)
cfap92 NA coding downstream 126527 11256014 ~ 11273479 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding downstream 414252 11543739 ~ 11583449 (+)
fbln2 fbln2,LOC108254974 coding downstream 479435 11608922 ~ 11671459 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding downstream 664524 11794011 ~ 11797434 (+)
LOC113538022 NA non-coding upstream 53698 11073762 ~ 11075590 (+)
G305642 NA non-coding upstream 329057 10797969 ~ 10800231 (+)
G305584 NA non-coding upstream 456714 10667197 ~ 10672574 (+)
G305583 LOC107676803 non-coding upstream 465074 10642266 ~ 10664214 (+)
G305568 NA non-coding upstream 587756 10541311 ~ 10541532 (+)
G305735 NA non-coding downstream 5028 11134515 ~ 11134724 (+)
G305849 NA non-coding downstream 144098 11273585 ~ 11275616 (+)
G305833 NA non-coding downstream 168835 11298322 ~ 11300713 (+)
G305834 NA non-coding downstream 173803 11303290 ~ 11304633 (+)
G305865 NA non-coding downstream 181383 11310870 ~ 11312417 (+)
G305727 NA other upstream 16770 11111739 ~ 11112518 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 355846 10764274 ~ 10773442 (+)
G305515 NA other upstream 616018 10512671 ~ 10513270 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other upstream 1577527 9536125 ~ 9551761 (+)
nfasca nfasc other upstream 2567586 8481095 ~ 8561702 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 11749 11141236 ~ 11178473 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 85265 11214752 ~ 11221540 (+)
G305863 iqsec1,iqsec1b other downstream 184697 11314184 ~ 11315436 (+)
G305869 NA other downstream 196117 11325604 ~ 11326360 (+)
G305955 iqsec1 other downstream 351182 11480669 ~ 11481100 (+)

Expression


Co-expression Network