G305863 (iqsec1,iqsec1b)


Basic Information

Item Value
gene id G305863
gene name iqsec1,iqsec1b
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11314184 ~ 11315436 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362531
GTTGAAGAGGTTGAGGCCAATGCGGTAGTGGCGCTTGCGGATGACGTCATTGCTGAAGGCTGGTGAGTCCCAGCTGTTACGTGTCTCCTTGTGGTATGTCTGCTTGCTGAGTGTTTGCTCACGCAGGCTGTCCCGTGATGATGACTCTGAACTACAGTTGATTGTATCATTGGAATTGGATGTGCTGTTTACACTGTCATTGTCACCATCTGAGAAATCAGACTCTGATTTGCTCTGCCTGTTGGCTGTGCCATTGATGGCCAGGTGGCTCTCTAGCTGCCGTGGTCGATGCCGGGGGACATCATCATCTCTTCGAGGGATGGAAGGGTGGGAGGGATGTGAGGGATGAGAGGGATGGCGCTTGGGGCTGCCCGGCTGGGTAGGCCCACCCCTTTCATAGGCATTCTGCCGTTTTAGAGAACTGCGCTCAGAGCGATcactcaactccactgaactgTCACTGGGGGGTTCAATGGTAAGCAGAGGGAGGTGGTCCATCCTCACCCTCTGCTCCTGGCACTCCAGAGATGGCGTGCTGCGACAGCTAGTGTCAGTGTCACCCTTGTCTTCCTTGTGTACCCAATAGTCCTGCGAGGAGTTTAGTGCACGCAGCTGCAGTTCTGGATCCATAGACGTTCTGTCCACTACAGACTGCGAGAGAGGCAAGGGGGGTGACAGTTCCTCCTCATCAATGTAGAGGGTCACGTCGCTGTATGATGCTGTCATCTCATCAAGCTTGCGTCTGTCTCCGCTGTGTGATTGTTTCACCTGATACGTGATGTCCCGATCCAGGTCACCGTGTCCCCGTTGCCCTTCATCTTGCCCTTCATCCCCATGCAAGCTGCGACAGTTCAGCGCATCGTCAATTGACTCAGCCAGCGACTTCACCTGCCTGGAGAAGGCGTCTTCCAGCTCGGTGATGGCATCCGTGAAGTCGCTTTGTCCTGCCTGTGACTTAACGTTGACGGGTACCATGTCTCCACGCTCTGACTGTGCCAGCTTAGAGCTGTCGTCGCTCAAGGAGAGCTGCTTGCCCTCAAAGTAGGAGCTGTGGACTTTCTCAGGTCCTTCGAAGGAAAATTGCATCCTCATATTGGAAAGGACGATGCGCCTGGACATGCGGTTCTCAGACATAGAACTCCTGAGGCGCTCAAAATTCTTGTTCATCTGATACTGGCGGAAAGCTGTCTGGATGGTCCGGGCCGCATGTCGGGTTATGAAACGTCCCCCGTACTTCCGCTCCAGCATCTCCA

Function

symbol description
iqsec1b Acts upstream of or within angiogenesis and lymphangiogenesis. Predicted to be located in cytoplasm. Is expressed in liver. Human ortholog(s) of this gene implicated in intellectual developmental disorder with short stature and behavioral abnormalities. Orthologous to human IQSEC1 (IQ motif and Sec7 domain ArfGEF 1).
iqsec1 Predicted to enable protein kinase binding activity. Predicted to be involved in several processes, including positive regulation of focal adhesion disassembly; positive regulation of keratinocyte migration; and regulation of postsynaptic neurotransmitter receptor internalization. Located in nucleolus. Implicated in intellectual developmental disorder with short stature and behavioral abnormalities.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU362531 True 1253 TUCP 0.54 1 11314184 11315436

Neighbor

gene id symbol gene type direction distance location
cfap92 NA coding upstream 40705 11256014 ~ 11273479 (+)
map1lc3a map1lc3a,LOC107551126 coding upstream 78923 11224148 ~ 11235261 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding upstream 173871 11107291 ~ 11140313 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding upstream 207019 11079060 ~ 11107165 (+)
rbm12 rbm12,LOC108424674,LOC107749443,LOC107685660,LOC107551121,LOC107727817 coding upstream 227491 11079081 ~ 11086693 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding downstream 228303 11543739 ~ 11583449 (+)
fbln2 fbln2,LOC108254974 coding downstream 293486 11608922 ~ 11671459 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding downstream 478575 11794011 ~ 11797434 (+)
alpl alpl,LOC107691326,LOC107685635 coding downstream 752188 12067624 ~ 12096756 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 861654 12177090 ~ 12185144 (+)
G305865 NA non-coding upstream 1767 11310870 ~ 11312417 (+)
G305834 NA non-coding upstream 9551 11303290 ~ 11304633 (+)
G305833 NA non-coding upstream 13471 11298322 ~ 11300713 (+)
G305849 NA non-coding upstream 38568 11273585 ~ 11275616 (+)
G305735 NA non-coding upstream 179460 11134515 ~ 11134724 (+)
G305864 iqsec1,LOC107551128,LOC107749434 non-coding downstream 1751 11317187 ~ 11317500 (+)
LOC117599893 NA non-coding downstream 37440 11352876 ~ 11355077 (+)
G305903 NA non-coding downstream 94095 11409531 ~ 11410296 (+)
G305920 NA non-coding downstream 114383 11429819 ~ 11430045 (+)
G306106 NA non-coding downstream 227497 11542933 ~ 11543138 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 92644 11214752 ~ 11221540 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other upstream 135711 11141236 ~ 11178473 (+)
G305727 NA other upstream 201666 11111739 ~ 11112518 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other upstream 540742 10764274 ~ 10773442 (+)
G305515 NA other upstream 800914 10512671 ~ 10513270 (+)
G305869 NA other downstream 10168 11325604 ~ 11326360 (+)
G305955 iqsec1 other downstream 165233 11480669 ~ 11481100 (+)
G306103 NA other downstream 199623 11515059 ~ 11515813 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 1142165 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 2358918 13674354 ~ 13692912 (+)

Expression


Co-expression Network