G306103


Basic Information

Item Value
gene id G306103
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 11515059 ~ 11515813 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU362774
agcgcctgtactttctgcgaaggctgaggaaagcgcatctcccaccctccatcctcaccatgttctacagagggactatcgagagcatcctgtgcagctgcatcactgcctggtttgggaattgcactgtctcagatcgcaagaccctgcagcggatagtgaggacagctgagaagatcatcagggtctctcttccctccatctcggacatttacacctcccgctgcatccgcaaagccaccagcattgtggatgaccccacacacccctctcacacactcttcaccctcctgccgtctggtaaacggtaccgaagcattcgggccctcacaatcagactgtgcaatagtttcttccctcatgccatcagactcctcaacacctagaactggactgaaggaaggaacacacacacatacatatacacacatacacacaactgaacatcttccatgcacatgttttacacatgttttgcacatgttttatgctgctgctgctactattatgtttacacataatacaatactattatgtttacattacttcagctatttatatcaaactctgtattatttgcactattgtcacttggtcactttcaaacagaactgcgtactggttggcgttgtagttattgtactgtcttgttctgtcttgtgcgtccgcacgtttgcacttgtgcactttatgtttaatttatgtagtccccgtagttctgtgtcgttctgtgttgtcttatgtagcaccttggt

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU362774 True 755 TUCP 0.46 1 11515059 11515813

Neighbor

gene id symbol gene type direction distance location
cfap92 NA coding upstream 241580 11256014 ~ 11273479 (+)
map1lc3a map1lc3a,LOC107551126 coding upstream 279798 11224148 ~ 11235261 (+)
fer1l4 LOC108254855,LOC108424672,LOC107727820,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC105912144 coding upstream 374746 11107291 ~ 11140313 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding upstream 407894 11079060 ~ 11107165 (+)
hdac11 hdac11,LOC107749433,LOC107727860 coding downstream 27926 11543739 ~ 11583449 (+)
fbln2 fbln2,LOC108254974 coding downstream 93109 11608922 ~ 11671459 (+)
barx1 barx1,LOC107727794,LOC107685643,LOC107691398 coding downstream 278198 11794011 ~ 11797434 (+)
alpl alpl,LOC107691326,LOC107685635 coding downstream 551811 12067624 ~ 12096756 (+)
nmur3 LOC108281099,LOC108439501 coding downstream 661277 12177090 ~ 12185144 (+)
G305920 NA non-coding upstream 85014 11429819 ~ 11430045 (+)
G305903 NA non-coding upstream 104763 11409531 ~ 11410296 (+)
LOC117599893 NA non-coding upstream 159982 11352876 ~ 11355077 (+)
G305864 iqsec1,LOC107551128,LOC107749434 non-coding upstream 197559 11317187 ~ 11317500 (+)
G305865 NA non-coding upstream 202642 11310870 ~ 11312417 (+)
G306106 NA non-coding downstream 27120 11542933 ~ 11543138 (+)
G306145 NA non-coding downstream 132487 11648300 ~ 11661421 (+)
G306199 NA non-coding downstream 236412 11752225 ~ 11754031 (+)
LOC113537887 NA non-coding downstream 321525 11837338 ~ 11843605 (+)
G306284 NA non-coding downstream 406656 11922469 ~ 11922676 (+)
G305955 iqsec1 other upstream 33959 11480669 ~ 11481100 (+)
G305869 NA other upstream 188699 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 199623 11314184 ~ 11315436 (+)
dynlrb1 dynlrb1,LOC106565026 other upstream 293519 11214752 ~ 11221540 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other upstream 336586 11141236 ~ 11178473 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other downstream 941788 12457601 ~ 12462536 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 2158541 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 2663970 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 2998779 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 4241077 15756890 ~ 15799890 (+)

Expression


Co-expression Network