LOC113537865 (LOC108280979)


Basic Information

Item Value
gene id LOC113537865
gene name LOC108280979
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 17260979 ~ 17263663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU366607
TCGTCATATTCACAAGGAGTGGTGTGTGCATCGGGGAAGGACGTTTCATACTCTGAGCgaaaacactgacattctccTTAAGAATAATGTCATCCGAGCTCGAGAAAGCAATGATAACCATCGTGCAGGTCTTCCACAAGTACTCCAGACACAAGTGTAAGCTGAAAAAGGCTGACCTGAAGGATCTTATTAACAATGAGATGAGCCAGTTTATCATGAAAATTCAGGACAAGGATACCCTTGACTTGCTATTTTCTGATCTGGATCAGAACGGAGACCGAGAGATAGACTTCCATGAGTTCATTCCTCTCATTGCCATGGTGACATCAGCATGCCACGATCTGTTCATTTTGGAGCACAGTCATTAAAATAATCGactctataaaaataaacaccattATAAACTGTGCTTTCTGAGAAGTTCAGATATTTATTGCATGAATCGTTCGCTTGGTTTTGATGTGTATGGTTATTTCATGTATTAAGCCTGAGCCAACATGGGGTCGCCCAACTGGTGCAACAGAAgacagcagttcgaaaagatgtgtTTGGCTGGCTTGACGTAGTCTCTGAaaaagcacgtgttagcctttaCCTTCTCTGGATGGTAGCT
>XM_026932533.1
TCGTCATATTCACAAGGAGTGGTGTGTGCATCGGGGAAGGACGTTTCATACTCTGAGCgaaaacactgacattctccTTAAGAATAATGTCATCCGAGCTCGAGAAAGCAATGATAACCATCGTGCAGGTCTTCCACAAGTACTCCAGACACAAGTGTAAGCTGAAAAAGGCTGACCTGAAGGATCTTATTAACAATGAGATGAGCCAGTTTATCATGAAAATTCAGGACAAGGATACCCTTGACTTGCTATTTTCTGATCTGGATCAGAACGGAGACCGAGAGATAGACTTCCATGAGTTCATTCCTCTCATTGCCATGGTGACATCAGCATGCCACGATCTGTTCATTTTGGAGCACAGTCATTAAAATAATCGactctataaaaataaacaccattATAAACTGTG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU366607 True 613 TUCP 0.42 3 17260979 17263663
XM_026932533.1 False 409 mRNA 0.42 3 17260979 17263459

Neighbor

gene id symbol gene type direction distance location
LOC113538082 LOC108254746 coding upstream 80300 17179622 ~ 17180679 (+)
her15.2 LOC108254744,LOC108254745,LOC108431592,LOC108431591 coding upstream 90975 17169010 ~ 17170004 (+)
LOC113537832 LOC108254739,LOC108254738,LOC108254741,LOC108431617,LOC108254742,LOC108254740 coding upstream 96371 17163772 ~ 17164608 (+)
LOC113538038 LOC108254738,LOC108254739,LOC108254741,LOC108254740 coding upstream 125865 17133887 ~ 17135114 (+)
LOC113537879 NA coding upstream 145818 17111543 ~ 17115161 (+)
lrrc38b lrrc38,LOC108281009,LOC108439497,LOC107691331,LOC107685631,LOC107568719,LOC107555684 coding downstream 34057 17297720 ~ 17318657 (+)
aadacl4 aadacl4 coding downstream 113296 17376959 ~ 17380928 (+)
c20h1orf158 c21h1orf158 coding downstream 117336 17380999 ~ 17387719 (+)
LOC113537884 NA coding downstream 761978 18025641 ~ 18028630 (+)
rnf207a LOC108255220 coding downstream 766530 18030193 ~ 18034462 (+)
G309461 inpp1 non-coding upstream 12904 17244700 ~ 17248075 (+)
G309389 NA non-coding upstream 76441 17172262 ~ 17184538 (+)
G309208 NA non-coding upstream 244735 17015636 ~ 17016244 (+)
G309184 NA non-coding upstream 260955 16903181 ~ 17000024 (+)
G309201 NA non-coding upstream 291542 16968396 ~ 16969437 (+)
LOC117599872 NA non-coding downstream 12777 17276440 ~ 17277832 (+)
G309525 NA non-coding downstream 120125 17383788 ~ 17384010 (+)
G309933 rpl22,LOC100304536,LOC103047485,LOC106566811,LOC108414460 non-coding downstream 655873 17919536 ~ 18018096 (+)
G309970 NA non-coding downstream 700761 17964424 ~ 18058167 (+)
G309981 chd5,LOC108414967 non-coding downstream 712952 17976615 ~ 17977091 (+)
amigo3 amigo3 other upstream 759295 16489361 ~ 16501684 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other upstream 1461089 15756890 ~ 15799890 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 2736003 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 2784162 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 3568067 13674354 ~ 13692912 (+)
snrpe snrpe other downstream 1423734 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 1823362 19087025 ~ 19087806 (+)
svbp NA other downstream 2231095 19494758 ~ 19498671 (+)
phf13 phf13 other downstream 2244526 19508189 ~ 19517178 (+)
vamp3 vamp3 other downstream 2505320 19768983 ~ 19783925 (+)

Expression


Co-expression Network