phf13 (phf13)


Basic Information

Item Value
gene id phf13
gene name phf13
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19508189 ~ 19517178 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368136
TTTTAGTGCCACTTCACTGTCACATCAGATCTGTTACCTGTAAATTCACGTAAATTTGGGGATTTACACCCTTCGTGCTGTCGATTCCGATCCCTGTCATCGCTTGGGTCGTCGATCTGAGTGACTCGAATTCTGCCTCGAAATTTCCACTTATTTTCACTCCACTTCATAGAAATGGACAACTCCGACGTTAAAACATCCGCGTTTGACTCACAGGGTTACAGTCCAACGTACAAAAGGAAAAGGACAGTAGAAGATTTCAACAAGTTTTGCACATTCGTCTTGGCCTATGCAGGTTATATTCCATATCCACAGGAGGAGGCGCCGCTCAGGAGCAGCTCGAGTCCTCCCAACAGCACGGGTAGCACAGCCGACAGCGATGGCCTTCCCTCTCCCGATCAGCCTCCGCACAAAAGCCGCAAGAGCTTCAGCGGCTTCAAGAGGCCCGCGAACGACGAGCCAGAGCTCCACAAGCGGCCCAAATCGACGGGCTTCCTCCTCGAAGGACGCAAGAAAACCgataaaatgaagaagaagaaaaagaagcagatGGAGAACAGCAAGTCCGACGATTCTGGATCTTTCCCGCCATTTCCCTCCGGCACCAGAGCGGAGATTTCTGCTTTCGGTTGCACCGTCAAGGAGGAACCGGAGGATTACATCAGCATCTCTACGCCGCCTTCGTACGCCGAGCGCTCCGCTCACCCCGGCACCAGCTCTCCGCTCAGTTCAGGCTCTCACAGCACCGTAGGCTGTAAAAAGGAACCGGAGGCCGAGCGGGCGTGCTGGGATTCCTCGGCCAGCTCGGGAACGGAGTCCAGAGGCGCGAGCAGGGAGAGGCTGGCGCTGCCTGAGGGAGAAGCCGTGGTCTTGAAGATGGAGGGATTCCCCGGCACTAGAACGGTGATACGCCAGGGAAAGCAGGTGGTGTTCCGCGACGAAGACGGATCCGCCGACGACGAGGACATCATGGTCGATTCAGACGACGATTCGTGGGACCTGGTGACGTGTTTCTGTATGAAGCCCTTCGCCGGCAGGGCGATGATCGAATGCAACCAGTGCAACACCTGGATTCACCTGTCCTGCGCCAAAATCCGCAAGTCCAACGTTCCGAGACGTACACCTGCCAGCGGTGCAAAGACTCCAAATTTGACATTCGGCGCTCGAACCGCTCGCGCATGGGCTCTCGAAAGCACCTTCTGGACTGACGTCGCTCGCGCCCCTCCCCCGAGTACGAACTCTGATCGAGACAGGAGACGAGTACAGAAGAGGAAGGGCTCTGACTGCGttatcaaacttttttt
>XM_026932701.2
GTGAAGACGCAGCCTGGCCGCTGTGCTCGGGGGAGGTTTTCTAGCTTTTTTGAAGCTTTGCGCTTGTTTTAGTGCCACTTCACTGTCACATCAGATCTGTTACCTGTAAATTCACGTAAATTTGGGGATTTACACCCTTCGTGCTGTCGATTCCGATCCCTGTCATCGCTTGGGTCGTCGATCTGAGTGACTCGAATTCTGCCTCGAAATTTCCACTTATTTTCACTCCACTTCATAGAAATGGACAACTCCGACGTTAAAACATCCGCGTTTGACTCACAGGGTTACAGTCCAACGTACAAAAGGAAAAGGACAGTAGAAGATTTCAACAAGTTTTGCACATTCGTCTTGGCCTATGCAGGTTATATTCCATATCCACAGGAGGAGGCGCCGCTCAGGAGCAGCTCGAGTCCTCCCAACAGCACGGGTAGCACAGCCGACAGCGATGGCCTTCCCTCTCCCGATCAGCCTCCGCACAAAAGCCGCAAGAGCTTCAGCGGCTTCAAGAGGCCCGCGAACGACGAGCCAGAGCTCCACAAGCGGCCCAAATCGACGGGCTTCCTCCTCGAAGGACGCAAGAAAACCgataaaatgaagaagaagaaaaagaagcagatGGAGAACAGCAAGTCCGACGATTCTGGATCTTTCCCGCCATTTCCCTCCGGCACCAGAGCGGAGATTTCTGCTTTCGGTTGCACCGTCAAGGAGGAACCGGAGGATTACATCAGCATCTCTACGCCGCCTTCGTACGCCGAGCGCTCCGCTCACCCCGGCACCAGCTCTCCGCTCAGTTCAGGCTCTCACAGCACCGTAGGCTGTAAAAAGGAACCGGAGGCCGAGCGGGCGTGCTGGGATTCCTCGGCCAGCTCGGGAACGGAGTCCAGAGGCGCGAGCAGGGAGAGGCTGGCGCTGCCTGAGGGAGAAGCCGTGGTCTTGAAGATGGAGGGATTCCCCGGCACTAGAACGGTGATACGCCAGGGAAAGCAGGTGGTGTTCCGCGACGAAGACGGATCCGCCGACGACGAGGACATCATGGTCGATTCAGACGACGATTCGTGGGACCTGGTGACGTGTTTCTGTATGAAGCCCTTCGCCGGCAGGGCGATGATCGAATGCAACCAGTGCAACACCTGGATTCACCTGTCCTGCGCCAAAATCCGCAAGTCCAACGTTCAGACGTACACCTGCCAGCGGTGCAAAGACTCCAAATTTGACATTCGGCGCTCGAACCGCTCGCGCATGGGCTCTCGAAAGCACCTTCTGGACTGACGTCGCTCGCGCCCCTCCCCCGAGTACGAACTCTGATCGAGACAGGAGACGAGTACAGAAGAGGAAGGGCTCTGACTGCGttatcaaactttttttttttttttttttatatata

Function

symbol description
phf13 Predicted to enable metal ion binding activity. Orthologous to human PHF13 (PHD finger protein 13).

NR:

description
PHD finger protein 13 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368136 False 1304 TUCP 0.55 5 19508255 19517159
XM_026932701.2 True 1387 mRNA 0.55 6 19508189 19517178

Neighbor

gene id symbol gene type direction distance location
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding upstream 144206 19349748 ~ 19363983 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding upstream 165126 19337932 ~ 19343063 (+)
mfsd4aa LOC108254837 coding upstream 448646 19042582 ~ 19059543 (+)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 470521 18972962 ~ 19037668 (+)
si:ch211-112f3.4 LOC108254938 coding upstream 704287 18790926 ~ 18803902 (+)
LOC113538092 camta1 coding downstream 18233 19535411 ~ 19762252 (+)
per3 per3 coding downstream 270643 19787821 ~ 19809321 (+)
si:dkey-264d12.1 LOC108254813 coding downstream 298728 19815906 ~ 19834429 (+)
si:ch211-193i15.1 LOC108254870 coding downstream 366648 19883826 ~ 19894420 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding downstream 487227 20004405 ~ 20022989 (+)
G310686 NA non-coding upstream 386133 19090382 ~ 19122056 (+)
G310703 NA non-coding upstream 395162 19110129 ~ 19113027 (+)
G310680 NA non-coding upstream 422682 19082369 ~ 19085507 (+)
G310679 NA non-coding upstream 426068 19081534 ~ 19082121 (+)
G310649 NA non-coding upstream 441703 19060335 ~ 19066486 (+)
G310828 NA non-coding downstream 44005 19561183 ~ 19561390 (+)
G310870 NA non-coding downstream 199903 19717081 ~ 19717329 (+)
G310882 NA non-coding downstream 294260 19811438 ~ 19811735 (+)
G310880 NA non-coding downstream 318501 19835679 ~ 19836564 (+)
LOC117599874 NA non-coding downstream 322243 19839421 ~ 19848284 (+)
svbp NA other upstream 9518 19494758 ~ 19498671 (+)
G310681 LOC108254836 other upstream 420383 19087025 ~ 19087806 (+)
snrpe snrpe other upstream 816175 18687397 ~ 18692014 (+)
LOC113537865 LOC108280979 other upstream 2244526 17260979 ~ 17263663 (+)
amigo3 amigo3 other upstream 3006505 16489361 ~ 16501684 (+)
vamp3 vamp3 other downstream 251805 19768983 ~ 19783925 (+)
si:dkey-264d12.5 LOC108254816 other downstream 331289 19848467 ~ 19868481 (+)
errfi1a errfi1 other downstream 602205 20119383 ~ 20177272 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 1290680 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 1353474 20870652 ~ 20882365 (+)

Expression


Co-expression Network