si:dkey-264d12.5 (LOC108254816)


Basic Information

Item Value
gene id si:dkey-264d12.5
gene name LOC108254816
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19848467 ~ 19868481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368220
GCTCCCTGCAGCAGCCTCCTGATCACCTCACGGATGTGAGGAGCCTGCTCCACCGGAGGATTGGTGTAGACCATGGCTCGCCCCACACCATCCCATCTGTCCTTCTCCGGCCATCCAAGCTCCAGACATGGAGCCGGCGTGTCTGAAAGCGCGGGGAAATACTGATCCGATAAGCCCTGCACGTCTGAGCTGCTTTCACTCCCAATGTCCCCGTTTTCCACGACCTCCACGTGATGATCCTCCACCCAGCTGGAGACCTGGTTCACCTCCTCTGGGGAGAGAAAGGGTTCGAGTCGATGTGCGCTCAGTTTGGTGTAGAAAGCTCCAGGGCCGTCTCTAAGCAGGGATTCCAGGGCGCTGCGTTCCACCTCTGAATGGAGGAACTCCGGGTTGGACTCATTTGCAGATCTGGGAAAGCCCACTGAAGTAGAAGAGGCCCCTCCTCGACGTGGTGAAGAGCTGGCAAATGAACACGAtgaaggagatggaggagaagaTCACAGACAGGACCATGAGCGCCTGCACCGACTGCAACCAATCTGCGACAGCGGATACACGTGAGACCTCCGTCACCCACAGACAAGCAGACAgaGCAGGAAGTAAGTATCCCTAAGCGCTCATTTATTCGCTCCTGTTTGGATACCTGGCACAGACTCCAGTCTTCCCGTTTCTGTGACACTCCTCTCaactctgtgttttttgtcacaCAGTTTGGAAAACAGAACAATCCCTACGTAGAGAGCTTTTAAACCTGGCAAAATCAGTGTTGCTATGCCAAAAACATTCGCTATAATAAAGATGA
>XM_026932461.2
gacACACACTGCTTTCCTGACTCTCATTTCTCATTGATTAGTAGCGGGATGAAGGCTGTAAAGCTCGGTTGCTTGGCAACGCCGTGATTTTTTTACATGGATGATTTGTAAAGTTTACAGCTCATACTGACGGCGAGAAACTGCGACTTTTACTCAAGCCgcttttactcttttatttcCGGAGAGTTAGTGATTTAATATCGTTTCCTCCTCATAGTGCAGGTCGTGTACGAGTTATCTGGTGCTGGCGGTGAACATGAAACCAGAAGAgATGTTAGAGATGGAGACGCGACTGCAGCAGGAGGGTCTGTGTTCGGAGGTCTCGTCTGACTCGGAGCGACTGGACCGTCTGTGGCGTCTCTTTGTCAAGAAGGAGAACAGTGTGAGGATGCTCACGCGGGAACTTGAGGAACTGCGAGCTAAACACGCCGCTGAAATCGACATGGTTCAGCTGTACATCCAGAACATCCGAAGTCTCTCCAAGACACGGGACTCGATGGCACTGGAGCTCGAGCGGGAAAACGAAACGCTTCATTCCAACCTGACGGAGCTCAATCTGCAGCAAGAGGCTCAGAAGAGTGAGATAGCTGAGATGTTGGTGCAGGAGGGCCTGGCTGAGATCATGACCAGCAGCCTGAGCGAGCAGGTGGCGTACCTCCTCGCAGACCGAGCTGCTCTCATGGAAAAGATTCAAGCCCTGGAAGATGGGGACTCGAAGACcctaaacgtaaagtgcactcAGAGACAAAGAGCTCCTGATGAAAATGTGGCACCACTGCAAGCTCAGAGCCCTTGGAAGAGGTTGCTTGGTTTCAGGAAGGCTGCACAGGCCAAGCAGGGGTTTACACATAATGATAACCAAGCCAATGAGGACAATACGTCTAAAGCCAGAGAGCGGAGTTTGCTGGAGAGGGACCTGGACGAGGCCTCCACCAGGCTGAACCTGGCTCACAAGGAGATCCGGCGCCTCACTGATGAGCTCGAGTCGGCTCACCTGACCAAGCGTACCTACGagTCAGAGCTCCATGGCGCGCAGGTGGAAGCTGAGCAGCTTAGGCGTGAGGTGGAGAAGCTGAAACGCTGTGATTTGGCTGAGGTTCAGGCGATAAAGGAGATGAAGGAGGTCCTGGATGCGGAGGTCCGTCATCTGAGGGACAGTGTTCACACCATGCATGCAGAACGTGCACAACTCCTAGAGCTGATTGATAGAAACTTTAAGGAGTTGGACAGTGAGGATGAGGACTTTATCCGTGCTTTGACCCGGAAACTGACGCCGACCCGTCGCACTCGCAAGAAACAAAAGGACGCCCATAAAAGGTGCCCAGAGGAGCTAGACGAAGGGCTCAGCAGCCTGCAGGAGCTAAATCAGGTTGTCGTGAAGCTCCAGGCCGATCTCGAGCAGGAGACGGAGCTGAGAAATAAGGTCGAGGAGGAGGAGTGCGATgatgagaggaggaggaaggaggcaGAACAGCAGACTCTGGAGCATCAGGACAAAGACCACAACGCCAAAGTGCAGCATCTTCAGCAAAAGCTGGTGGCTCTACACGCACAACTGGAACAGCTAAAATCTGTACTCACTGAGGAGCAGCGACGGGACCTGGCCATGAAGGTGCAGAATAACACGCAGAGCGCCCAGGACGTCCTCAAGACCACGCTCCAGGAGCAAGAGAACCTGAAGCTCAGACAGGACGCTGAGAGGCTGGAGGAGTTCTGTGAGAGACTCCAGACTGAGCTGCAGCAGGTCCACTGTAACCTTCATGTACACGTCAGaaaatatgATGAGCTGAAGGTGCGCCACCGAGAAAAACTTGCAGAAGCTAAACAGGTGTATCTCCGAGAGATGACGTGGCGTGATCAGAAGATGaaggagcaggagagagagctggacatCCTCACAAAGCGACTTAAGAAGGAGAGTGAGATGGTGAAAACGGTGACGGCTGAGAACGAAGCTCTGCTTCAGACCAAGAAGACGCTGCTGTGTCAGCTGAACGAAGCAGAAGAGAACCGAAAAAACGCAGCAGCCAAAATCTCTGCTCTGCAGCGAAGGGTCGATTTCCTGGAGAAGGACAGCATGCAGCAGTGGGAGATGAACATGGAGAAGTCCACGCAGATCGCCAAGCTCGAGAGACGGCTGTGGGACGTGGAATCTCTAAAAAGCACTCGGGTAGACATTCGAATGGCGCTAATAGGAGAAACTGTAGAAGGTTTTCACGTCATACACTACCTGCAGAAACATGATGGGAGTCGCATCCTGGAGGACAGAAAGGAAGCAGGTTTGAGTGAAAGTGGATTTGAAACGTCCATCATCTCAAAGACGAGAGACGAACTTGCGGAGAAACTCGGACTCTCTGCGTCTCCGAGTTCGAGCAGTGGTTCAGAGATGGGCTACATGAACATCTTTACACACAACCTGGTGTGACGCGAAGGCGGCGTTAACGccacaaGGCCTCAAAGTGCTGCAACAACGGTCTTTGGATGTCCCTACTATTTCCTCACCCCACTCTCTCTAAAACTCCATGCTGAGGTAGAGAGAGTGAGCGATAGTGCGAATAAAAAAAA
>XM_026932462.2
AACACGAtgaaggagatggaggagaagaTCACAGACAGGACCATGAGCGCCTGCACCGACTGCAACCAATCTGCGACAGCGGATACACGTGAGACCTCCGTCACCCACAGACAAGCAGACAATGTTAGAGATGGAGACGCGACTGCAGCAGGAGGGTCTGTGTTCGGAGGTCTCGTCTGACTCGGAGCGACTGGACCGTCTGTGGCGTCTCTTTGTCAAGAAGGAGAACAGTGTGAGGATGCTCACGCGGGAACTTGAGGAACTGCGAGCTAAACACGCCGCTGAAATCGACATGGTTCAGCTGTACATCCAGAACATCCGAAGTCTCTCCAAGACACGGGACTCGATGGCACTGGAGCTCGAGCGGGAAAACGAAACGCTTCATTCCAACCTGACGGAGCTCAATCTGCAGCAAGAGGCTCAGAAGAGTGAGATAGCTGAGATGTTGGTGCAGGAGGGCCTGGCTGAGATCATGACCAGCAGCCTGAGCGAGCAGGTGGCGTACCTCCTCGCAGACCGAGCTGCTCTCATGGAAAAGATTCAAGCCCTGGAAGATGGGGACTCGAAGACcctaaacgtaaagtgcactcAGAGACAAAGAGCTCCTGATGAAAATGTGGCACCACTGCAAGCTCAGAGCCCTTGGAAGAGGTTGCTTGGTTTCAGGAAGGCTGCACAGGCCAAGCAGGGGTTTACACATAATGATAACCAAGCCAATGAGGACAATACGTCTAAAGCCAGAGAGCGGAGTTTGCTGGAGAGGGACCTGGACGAGGCCTCCACCAGGCTGAACCTGGCTCACAAGGAGATCCGGCGCCTCACTGATGAGCTCGAGTCGGCTCACCTGACCAAGCGTACCTACGagTCAGAGCTCCATGGCGCGCAGGTGGAAGCTGAGCAGCTTAGGCGTGAGGTGGAGAAGCTGAAACGCTGTGATTTGGCTGAGGTTCAGGCGATAAAGGAGATGAAGGAGGTCCTGGATGCGGAGGTCCGTCATCTGAGGGACAGTGTTCACACCATGCATGCAGAACGTGCACAACTCCTAGAGCTGATTGATAGAAACTTTAAGGAGTTGGACAGTGAGGATGAGGACTTTATCCGTGCTTTGACCCGGAAACTGACGCCGACCCGTCGCACTCGCAAGAAACAAAAGGACGCCCATAAAAGGTGCCCAGAGGAGCTAGACGAAGGGCTCAGCAGCCTGCAGGAGCTAAATCAGGTTGTCGTGAAGCTCCAGGCCGATCTCGAGCAGGAGACGGAGCTGAGAAATAAGGTCGAGGAGGAGGAGTGCGATgatgagaggaggaggaaggaggcaGAACAGCAGACTCTGGAGCATCAGGACAAAGACCACAACGCCAAAGTGCAGCATCTTCAGCAAAAGCTGGTGGCTCTACACGCACAACTGGAACAGCTAAAATCTGTACTCACTGAGGAGCAGCGACGGGACCTGGCCATGAAGGTGCAGAATAACACGCAGAGCGCCCAGGACGTCCTCAAGACCACGCTCCAGGAGCAAGAGAACCTGAAGCTCAGACAGGACGCTGAGAGGCTGGAGGAGTTCTGTGAGAGACTCCAGACTGAGCTGCAGCAGGTCCACTGTAACCTTCATGTACACGTCAGaaaatatgATGAGCTGAAGGTGCGCCACCGAGAAAAACTTGCAGAAGCTAAACAGGTGTATCTCCGAGAGATGACGTGGCGTGATCAGAAGATGaaggagcaggagagagagctggacatCCTCACAAAGCGACTTAAGAAGGAGAGTGAGATGGTGAAAACGGTGACGGCTGAGAACGAAGCTCTGCTTCAGACCAAGAAGACGCTGCTGTGTCAGCTGAACGAAGCAGAAGAGAACCGAAAAAACGCAGCAGCCAAAATCTCTGCTCTGCAGCGAAGGGTCGATTTCCTGGAGAAGGACAGCATGCAGCAGTGGGAGATGAACATGGAGAAGTCCACGCAGATCGCCAAGCTCGAGAGACGGCTGTGGGACGTGGAATCTCTAAAAAGCACTCGGGTAGACATTCGAATGGCGCTAATAGGAGAAACTGTAGAAGGTTTTCACGTCATACACTACCTGCAGAAACATGATGGGAGTCGCATCCTGGAGGACAGAAAGGAAGCAGGTTTGAGTGAAAGTGGATTTGAAACGTCCATCATCTCAAAGACGAGAGACGAACTTGCGGAGAAACTCGGACTCTCTGCGTCTCCGAGTTCGAGCAGTGGTTCAGAGATGGGCTACATGAACATCTTTACACACAACCTGGTGTGACGCGAAGGCGGCGTTAACGccacaaGGCCTCAAAGTGCTGCAACAACGGTCTTTGGATGTCCCTACTATTTCCTCACCCCACTCTCTCTAAAACTCCATGCTGAGGTAGAGAGAGTGAGCGATAGTGCGAATAAAAAAAA
>XM_026932463.2
gacACACACTGCTTTCCTGACTCTCATTTCTCATTGATTAGTAGCGGGATGAAGGCTGTAAAGCTCGGTTGCTTGGCAACGCCGTGATTTTTTTACATGGATGATTTGTAAAGTTTACAGCTCATACTGACGGCGAGAAACTGCGACTTTTACTCAAGCCgcttttactcttttatttcCGGAGAGTTAGTGATTTAATATCGTTTCCTCCTCATAGTGCAGGTCGTGTACGAGTTATCTGGTGCTGGCGGTGAACATGAAACCAGAAGAgATGTTAGAGATGGAGACGCGACTGCAGCAGGAGGGTCTGTGTTCGGAGGTCTCGTCTGACTCGGAGCGACTGGACCGTCTGTGGCGTCTCTTTGTCAAGAAGGAGAACAGTGTGAGGATGCTCACGCGGGAACTTGAGGAACTGCGAGCTAAACACGCCGCTGAAATCGACATGGTTCAGCTGTACATCCAGAACATCCGAAGTCTCTCCAAGACACGGGACTCGATGGCACTGGAGCTCGAGCGGGAAAACGAAACGCTTCATTCCAACCTGACGGAGCTCAATCTGCAGCAAGAGGCTCAGAAGAGTGAGATAGCTGAGATGTTGGTGCAGGAGGGCCTGGCTGAGATCATGACCAGCAGCCTGAGCGAGCAGGTGGCGTACCTCCTCGCAGACCGAGCTGCTCTCATGGAAAAGATTCAAGCCCTGGAAGATGGGGACTCGAAGACcctaaacgtaaagtgcactcAGAGACAAAGAGCTCCTGATGAAAATGTGGCACCACTGCAAGCTCAGAGCCCTTGGAAGAGGTTGCTTGGTTTCAGGAAGGCTGCACAGGCCAAGCAGGGGTTTACACATAATGATAACCAAGCCAATGAGGACAATACGTCTAAAGCCAGAGAGCGGAGTTTGCTGGAGAGGGACCTGGACGAGGCCTCCACCAGGCTGAACCTGGCTCACAAGGAGATCCGGCGCCTCACTGATGAGCTCGAGTCGGCTCACCTGACCAAGCGTACCTACGagTCAGAGCTCCATGGCGCGCAGGTGGAAGCTGAGCAGCTTAGGCGTGAGGTGGAGAAGCTGAAACGCTGTGATTTGGCTGAGGTTCAGGCGATAAAGGAGATGAAGGAGGTCCTGGATGCGGAGGTCCGTCATCTGAGGGACAGTGTTCACACCATGCATGCAGAACGTGCACAACTCCTAGAGCTGATTGATAGAAACTTTAAGGAGTTGGACAGTGAGGATGAGGACTTTATCCGTGCTTTGACCCGGAAACTGACGCCGACCCGTCGCACTCGCAAGAAACAAAAGGACGCCCATAAAAGGTGCCCAGAGGAGCTAGACGAAGGGCTCAGCAGCCTGCAGGAGCTAAATCAGGTTGTCGTGAAGCTCCAGGCCGATCTCGAGCAGGAGACGGAGCTGAGAAATAAGGTCGAGGAGGAGGAGTGCGATgatgagaggaggaggaaggaggcaGAACAGCAGACTCTGGAGCATCAGGACAAAGACCACAACGCCAAAGTGCAGCATCTTCAGCAAAAGCTGGTGGCTCTACACGCACAACTGGAACAGCTAAAATCTGTACTCACTGAGGAGCAGCGACGGGACCTGGCCATGAAGGTGCAGAATAACACGCAGAGCGCCCAGGACGTCCTCAAGACCACGCTCCAGGAGCAAGAGAACCTGAAGCTCAGACAGGACGCTGAGAGGCTGGAGGAGTTCTGTGAGAGACTCCAGACTGAGCTGCAGCAGGTCCACTGTAACCTTCATGTACACGTCAGaaaatatgATGAGCTGAAGGTGCGCCACCGAGAAAAACTTGCAGAAGCTAAACAGGTGTATCTCCGAGAGATGACGTGGCGTGATCAGAAGATGaaggagcaggagagagagctggacatCCTCACAAAGCGACTTAAGAAGGAGAGTGAGATGGTGAAAACGGTGACGGCTGAGAACGAAGCTCTGCTTCAGACCAAGAAGACGCTGCTGTGTCAGCTGAACGAAGCAGAAGAGAACCGAAAAAACGCAGCAGCCAAAATCTCTGCTCTGCAGCGAAGGGTCGATTTCCTGGAGAAGGACAGCATGCAGCAGTGGGAGATGAACATGGAGAAGTCCACGCAGATCGCCAAGCTCGAGAGACGGCTGTGGGACGTGGAATCTCTAAAAAGCACTCGGTACCTGCAGAAACATGATGGGAGTCGCATCCTGGAGGACAGAAAGGAAGCAGGTTTGAGTGAAAGTGGATTTGAAACGTCCATCATCTCAAAGACGAGAGACGAACTTGCGGAGAAACTCGGACTCTCTGCGTCTCCGAGTTCGAGCAGTGGTTCAGAGATGGGCTACATGAACATCTTTACACACAACCTGGTGTGACGCGAAGGCGGCGTTAACGccacaaGGCCTCAAAGTGCTGCAACAACGGTCTTTGGATGTCCCTACTATTTCCTCACCCCACTCTCTCTAAAACTCCATGCTGAGGTAGAGAGAGTGAGCGATAGTGCGAATAAAAAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368220 False 802 lncRNA 0.54 3 19848467 19855283
XM_026932461.2 True 2565 mRNA 0.52 20 19857064 19868481
XM_026932462.2 False 2415 mRNA 0.53 20 19853448 19868481
XM_026932463.2 False 2508 mRNA 0.52 20 19857064 19868481

Neighbor

gene id symbol gene type direction distance location
si:dkey-264d12.1 LOC108254813 coding upstream 14038 19815906 ~ 19834429 (+)
per3 per3 coding upstream 39146 19787821 ~ 19809321 (+)
LOC113538092 camta1 coding upstream 86215 19535411 ~ 19762252 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding upstream 484484 19349748 ~ 19363983 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding upstream 505404 19337932 ~ 19343063 (+)
si:ch211-193i15.1 LOC108254870 coding downstream 15345 19883826 ~ 19894420 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding downstream 135924 20004405 ~ 20022989 (+)
slc45a1 slc45a1,LOC107654425 coding downstream 172858 20041339 ~ 20053146 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding downstream 311427 20179908 ~ 20237403 (+)
park7 park7,LOC107657982,LOC107701995 coding downstream 410091 20278572 ~ 20288754 (+)
LOC117599874 NA non-coding upstream 183 19839421 ~ 19848284 (+)
G310880 NA non-coding upstream 11903 19835679 ~ 19836564 (+)
G310882 NA non-coding upstream 36732 19811438 ~ 19811735 (+)
G310870 NA non-coding upstream 131138 19717081 ~ 19717329 (+)
G310828 NA non-coding upstream 287077 19561183 ~ 19561390 (+)
G310905 NA non-coding downstream 31397 19899878 ~ 19905766 (+)
G311204 NA non-coding downstream 92620 19961101 ~ 19961315 (+)
G311207 NA non-coding downstream 94033 19962514 ~ 19963668 (+)
G311225 NA non-coding downstream 127583 19996064 ~ 19996270 (+)
G311220 NA non-coding downstream 159415 20027896 ~ 20028312 (+)
vamp3 vamp3 other upstream 64542 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 331289 19508189 ~ 19517178 (+)
svbp NA other upstream 349796 19494758 ~ 19498671 (+)
G310681 LOC108254836 other upstream 760661 19087025 ~ 19087806 (+)
snrpe snrpe other upstream 1156453 18687397 ~ 18692014 (+)
errfi1a errfi1 other downstream 250902 20119383 ~ 20177272 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 939377 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 1002171 20870652 ~ 20882365 (+)

Expression


Co-expression Network