slc45a1 (slc45a1,LOC107654425)


Basic Information

Item Value
gene id slc45a1
gene name slc45a1,LOC107654425
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20041339 ~ 20053146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932557.2
tcagagacagaggagagagagagagagagagagagagagaggagcaatGCCTGCACCAAAGATAACACAAAGGAAAAAGACCCAGAGggaataaactgataaaaacgCGCTCAGTCCGGTTGAGGAGATGAACAGAAACCCTGACAAGTGTGTGCAGAACTCCAGAGCGTGATGTCCTCTCCCGGAATGGGCACGCCCAGCGACCCCCTCTTAGCCAGCCCAGGGCGAGAGGGCTTCGGGACGGCCCAGGGTGACACATGGAGGCCGACCCTTCCCAAAACCTGCAGCTTCCCGACGTCCACCACACGGCACCTCAGCCACCGGGCCAATAGCTTCCAGAGGCATCCAAAACGGCGAAAGCTCATCCGCCCGTCTCCGCCCCCTCCGCCCAACACGCCATGCCCGTTGGAGCAGCTGGACTTCAGTGATCTGCCTCCACGCCGCACTTTTCCTGACCTCCTCTTCAACGGCTGCATCCTGTTCGGCATCGAGTTCAGCTACGCCATGGAGACAGCCTACGTTACCCCCTTGCTTCTTCAGATGAATCTGCCTGATCAGTTCTACAGCCTCGTGTGGTTCATCAGCCCCATATTAGGGTTCCTGCTTCAGCCGATTCTTGGAGCGTGGAGTGATCGGTGCACGTCACGCTTTGGCCGCAGGAGGCCTTTTATCTTTGCCTTGGCCATCGGTGCTCTGCTTGGTCTAACGCTGGTGCTAAATGGGCGGGACATCGGATCTACGTTGGCAGACACTGCTGTTAATCACAAGTGGGGCATCGTGCTGACCGTGTGCGGAGTGGTTCTGATGGACTTCAGTGCTGACTCAGCGGATAATCCCAGCCACGCATACATGATGGATGTGTGCAGTCCAGAGGACCAGGATAGAGGCCTCAACATCCATGCCCTTCTGGCAGGTCTGGGGGGTGGATTCGGTTACATCGTGGGCGGCGTGAACTGGGACCACACCGAGTTCGGCAAGTTGATGGGAGGTCAGCTTCGAGTCATCTACCTGTTCACCAGCATAACCCTTATAATCACTACAGCTCTGACGCTTACTAGCATCCCTGAGCGTCCTCTTCTGCAGTCTCAAAAAAGGAGCTCGAAACATTTGAAGAGCCCCATCCTACCTCTGccaccttctcctcctccaACCGCTGGAGCCCTTCAGGaggtggaagaggaggaggaaggtcTTTACAGCTACCAGTTGTCTGGCCGTAGGTACCCGGATTGTTTGGGACACTCGTGTAGTGCCAATGcgaggctctgtgcaggtctcACCAGCCCCATCTCCCCTCTCAGCCCTCTGACACCCAAATATGGCAGCTTTATCAGCCGAGACAACACTCTGACAGACATTAACGAGTTTGCATCATCCTTGGGAACATCATACATAGATAGCGTGCTGATTGACTGTTACACTGGACAGCACATGCCCCAACCGTTGAAGCCGGAGACCATGACTCCATGCCTTCCTATGGGAGAAACTCCTCCTGCTCAGGTGTCACAGCTGGTCGAGGCACCGTCTCCAGCTGCCAACTCTCAGGAAAGGGAATTATCTCAACCAAACGGAGATCTGCAGGAAGCGGAAAGATTAGAGGCTATTGATGAAGTTCAAGCCAGTGAATGTTTGGAGTTGAATGAAGCATCTGAGCTCAGTGAGGCTCCGCAGGATGGTGGCAGATTAAAACGAGGAAGCATCACCTCAGGGATCCTAAAACGCCCTCAGAGTCTGGCCTTAATGGACGAGCCGCTGATTGGCCCCAGCAACGTTCTGGAGAACGGACGTAGACGCACTGTTACCTTCAGCCAGCAGGTTGCCAACATCCTCCTAAATGGGGTGCAATATGACAGTAAGCTCAGTGACAACGCAGAGGTTATAGACACTCAGATGTCTCTGAAGTTGCTCTGTATCGCCATCTACAGGATGCCCCCGTCCCTGCGCAGCCTGTGCACCAACCACTTCCTGGGCTGGTTGTCCTTCGAAGGCATGTTACTTTTCTACACGGACTTCATGGGCGAGGTGGTGTTTGGGGGCAACCCCAAGGCACCGGACAAGTCTGAGGCCTACCAGCGTTACAATGccggggtcagcatgggctgcTGGGGCATGTGCATCTACGCATTTAGTGCTGCTTTCTACTCAGCCATCCTGGAGAAGCTGGAGGAACGATTCTCTCTGCGCTCTTTGTATTTCTTCGCCTACCTGGCGTTCGGCTTGGGCACAGGTCTGGCCACGCTCTCCACCAACCTGTACGTGGTGCTGCCTCTTTGTGTCACCTATGGAGTCCTGTTCTCCTCACTCTGCACGCTGCCTTATTCGCTGCTCTGTGAATATTACCAGAGCCCACAGTTCTGCGGCTCCACAGAGGACGGCACCAGGAGGGGCATGGGGGTGGACATCTCTCTTCTCAGCTGCCAGTACTTCCTGGCCCAGATCCTGGTCTCCGTGGCGATGGGACCTCTGACTTCACTGGTGGGCGGGGCTCAGGGCGCGATGTACTTTGCGAGCCTCATGTCATTTGTGGGCTGCCTGTACTCCTCGCTGTGTGTGGTGTACCAGCTGCCACCTCCGGAGGGTGAGCGCTCGCAGAGTGAGAGCCAACCACTACTGGtgcacatataaacacacacacacacacacacacacacacacactctcatagaGGCCTgtaaacatacatatacatgcacatGAATTTTTACAAGCACTAATCACTGCTATCATGTCTCACATCATGCAAGAAACtttttgtaaacttttttaTTACCCAAGGCATGTTTGATTCCCTTTGCATACACtaagtgtgtttacatgcacagtAATAATCTGATCTAATTATCTGATTTCGGCAGTTATAAGTTAATTAACTTGGTTACATGAACAGCATACTGCGATATTGCGTATTAGATCATGACACCTTGGTTTTAgattatattcaatattcagaTTATTCCGCACATACACGTATACCATTAATATGATATCAACCGTTTACCGAATTCTGTACAAGTGTGTACGTGTAACCGGTCAAAAACACAATGTTTTGTGCAATtcgaaaacataaaaataaaatttcccTAAAACATAGTTGCCCCATGTTAAAACAAATATGCTTCAGGTTCCAAAAATCAGTGTAGATGTGTGCATGTCatatttagaaagaaatgtGATTACTGACTCACTTCAGGTTTCTGACTGCCCCTGATTTAGCCCTGTAGATCCCAAATAATGCACGCTAAAAAGTGGGCGTGTTGCAGGTGGTTTACAAAGAATA
>XM_034314369.1
tcagagacagaggagagagagagagagagagagagagagaggagcaatGCCTGCACCAAAGATAACACAAAGGAAAAAGACCCAGAGggaataaactgataaaaacgCGCTCAGTCCGGTTGAGGAGATGAACAGAAACCCTGACAAGTGTGTGCAGAACTCCAGAGCGTGATGTCCTCTCCCGGAATGGGCACGCCCAGCGACCCCCTCTTAGCCAGCCCAGGGCGAGAGGGCTTCGGGACGGCCCAGGGTGACACATGGAGGCCGACCCTTCCCAAAACCTGCAGCTTCCCGACGTCCACCACACGGCACCTCAGCCACCGGGCCAATAGCTTCCAGAGGCATCCAAAACGGCGAAAGCTCATCCGCCCGTCTCCGCCCCCTCCGCCCAACACGCCATGCCCGTTGGAGCAGCTGGACTTCAGTGATCTGCCTCCACGCCGCACTTTTCCTGACCTCCTCTTCAACGGCTGCATCCTGTTCGGCATCGAGTTCAGCTACGCCATGGAGACAGCCTACGTTACCCCCTTGCTTCTTCAGATGAATCTGCCTGATCAGTTCTACAGCCTCGTGTGGTTCATCAGCCCCATATTAGGGTTCCTGCTTCAGCCGATTCTTGGAGCGTGGAGTGATCGGTGCACGTCACGCTTTGGCCGCAGGAGGCCTTTTATCTTTGCCTTGGCCATCGGTGCTCTGCTTGGTCTAACGCTGGTGCTAAATGGGCGGGACATCGGATCTACGTTGGCAGACACTGCTGTTAATCACAAGTGGGGCATCGTGCTGACCGTGTGCGGAGTGGTTCTGATGGACTTCAGTGCTGACTCAGCGGATAATCCCAGCCACGCATACATGATGGATGTGTGCAGTCCAGAGGACCAGGATAGAGGCCTCAACATCCATGCCCTTCTGGCAGGTCTGGGGGGTGGATTCGGTTACATCGTGGGCGGCGTGAACTGGGACCACACCGAGTTCGGCAAGTTGATGGGAGGTCAGCTTCGAGTCATCTACCTGTTCACCAGCATAACCCTTATAATCACTACAGCTCTGACGCTTACTAGCATCCCTGAGCGTCCTCTTCTGCAGTCTCAAAAAAGGAGCTCGAAACATTTGAAGAGCCCCATCCTACCTCTGccaccttctcctcctccaACCGCTGGAGCCCTTCAGGaggtggaagaggaggaggaaggtcTTTACAGCTACCAGTTGTCTGGCCGTAGGTACCCGGATTGTTTGGGACACTCGTGTAGTGCCAATGcgaggctctgtgcaggtctcACCAGCCCCATCTCCCCTCTCAGCCCTCTGACACCCAAATATGGCAGCTTTATCAGCCGAGACAACACTCTGACAGACATTAACGAGTTTGCATCATCCTTGGGAACATCATACATAGATAGCGTGCTGATTGACTGTTACACTGGACAGCACATGCCCCAACCGTTGAAGCCGGAGACCATGACTCCATGCCTTCCTATGGGAGAAACTCCTCCTGCTCAGGTGTCACAGCTGGTCGAGGCACCGTCTCCAGCTGCCAACTCTCAGGAAAGGGAATTATCTCAACCAAACGGAGATCTGCAGGAAGCGGAAAGATTAGAGGCTATTGATGAAGTTCAAGCCAGTGAATGTTTGGAGTTGAATGAAGCATCTGAGCTCAGTGAGGCTCCGCAGGATGGTGGCAGATTAAAACGAGGAAGCATCACCTCAGGGATCCTAAAACGCCCTCAGAGTCTGGCCTTAATGGACGAGCCGCTGATTGGCCCCAGCAACGTTCTGGAGAACGGACGTAGACGCACTGTTACCTTCAGCCAGCAGGTTGCCAACATCCTCCTAAATGGGGTGCAATATGACAGTAAGCTCAGTGACAACGCAGAGGTTATAGACACTCAGATGTCTCTGAAGTTGCTCTGTATCGCCATCTACAGGATGCCCCCGTCCCTGCGCAGCCTGTGCACCAACCACTTCCTGGGCTGGTTGTCCTTCGAAGGCATGTTACTTTTCTACACGGACTTCATGGGCGAGGTGGTGTTTGGGGGCAACCCCAAGGCACCGGACAAGTCTGAGGCCTACCAGCGTTACAATGccggggtcagcatgggctgcTGGGGCATGTGCATCTACGCATTTAGTGCTGCTTTCTACTCAGCCATCCTGGAGAAGCTGGAGGAACGATTCTCTCTGCGCTCTTTGTATTTCTTCGCCTACCTGGCGTTCGGCTTGGGCACAGGTCTGGCCACGCTCTCCACCAACCTGTACGTGGTGCTGCCTCTTTGTGTCACCTATGGAGTCCTGTTCTCCTCACTCTGCACGCTGCCTTATTCGCTGCTCTGTGAATATTACCAGAGCCCACAGTTCTGCGGCTCCACAGAGGACGGCACCAGGAGGGGCATGGGGGTGGACATCTCTCTTCTCAGCTGCCAGTACTTCCTGGCCCAGATCCTGGTCTCCGTGGCGATGGGACCTCTGACTTCACTGGTGGGCGGGGCTCAGGGCGCGATGTACTTTGCGAGCCTCATGTCATTTGTGGGCTGCCTGTACTCCTCGCTGTGTGTGGTGTACCAGCTGCCACCTCCGGAGGGCAGAGCGGATGTTGAGACTGGAGTGTGAGCGACTACAGCTCAGCTGTAACGGAGAAGTGCCCACTACAGAAGAGACGAGCGAGCCaaatccactttttttttttggccagcaGGCAACAGATCAGGAAGACACATTAGGAACTAAAGTGGACTCAACATGAGACTCAAAAAGTACAATGCCTTcatattccactagggggcagacTTACTGCTTTTTCAGTGCAAGTAACACAAAATGTCGAACTGTTCTGCGATTTTTGgatttccagaattcagcagctttgGGCAGTCAGGggggagggaggaaaaaaa

Function

symbol description
slc45a1 Predicted to enable sucrose:proton symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC45A1 (solute carrier family 45 member 1).

NR:

description
proton-associated sugar transporter A-like isoform X3

GO: NA

KEGG:

id description
K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932557.2 True 3277 mRNA 0.52 9 20041339 20050611
XM_034314369.1 False 2891 mRNA 0.55 10 20041339 20053146

Neighbor

gene id symbol gene type direction distance location
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding upstream 18350 20004405 ~ 20022989 (+)
si:ch211-193i15.1 LOC108254870 coding upstream 146919 19883826 ~ 19894420 (+)
si:dkey-264d12.1 LOC108254813 coding upstream 206910 19815906 ~ 19834429 (+)
per3 per3 coding upstream 232018 19787821 ~ 19809321 (+)
LOC113538092 camta1 coding upstream 279087 19535411 ~ 19762252 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding downstream 126762 20179908 ~ 20237403 (+)
park7 park7,LOC107657982,LOC107701995 coding downstream 225426 20278572 ~ 20288754 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding downstream 235848 20288994 ~ 20385659 (+)
akr7a3 akr7a3,LOC108255199,LOC108431624,LOC108431625,LOC107706545,LOC102201483 coding downstream 405147 20458293 ~ 20465550 (+)
nab2 LOC108255101,LOC108431520 coding downstream 442750 20495896 ~ 20507184 (+)
G311220 NA non-coding upstream 13027 20027896 ~ 20028312 (+)
G311225 NA non-coding upstream 45069 19996064 ~ 19996270 (+)
G311207 NA non-coding upstream 77671 19962514 ~ 19963668 (+)
G311204 NA non-coding upstream 80024 19961101 ~ 19961315 (+)
G310905 NA non-coding upstream 135573 19899878 ~ 19905766 (+)
G311232 NA non-coding downstream 17827 20070973 ~ 20071359 (+)
G311246 NA non-coding downstream 56815 20109961 ~ 20110224 (+)
G311395 NA non-coding downstream 322867 20376013 ~ 20376698 (+)
G311407 NA non-coding downstream 342608 20395754 ~ 20396286 (+)
G311414 NA non-coding downstream 362438 20415584 ~ 20416179 (+)
si:dkey-264d12.5 LOC108254816 other upstream 172858 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 257414 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 524161 19508189 ~ 19517178 (+)
svbp NA other upstream 542668 19494758 ~ 19498671 (+)
G310681 LOC108254836 other upstream 953533 19087025 ~ 19087806 (+)
errfi1a errfi1 other downstream 66237 20119383 ~ 20177272 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 754712 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 817506 20870652 ~ 20882365 (+)

Expression


Co-expression Network