G311395


Basic Information

Item Value
gene id G311395
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20376013 ~ 20376698 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368791
ctgtgtgggtgtgtgtgtgactgtgtgggtgtgagtgtgtgtgtgagtgtgtgtgtgagtgtgttttcatCCCTTACAGTCCATTCTATCCTAAAGCTCTGCAGACTGACATCACCCTCGTTCTAAAGATTTAAGCCCCGAGattaacacacacctctcagCCCTGCCACGTTTGTTTATTCAGCACCTTGTATCACATTTCACACACGCCAGGGGCGTAACCAGAATAAAAGCGTCCAAACCAAAAGCCACCTCTAATTAAAAATGGGGTCAGAAAACTTTTtcaaacgtctcctcacagtcAGGCAATATTAatagctttatagaaatccgGATGTAAGTGTTAAATTATAATTGGGtcattataaataatgacaacAGCAGTCCACTCCATCAGAACAAGGAGGCGGTCCTGTAGAGTGAAACAGGAGATTTTgggtttcaaaaaaaaaaaaatagagaacgTTTCAGCTAACTTCCAGCAAAATcacttagatagatagatagacagatagataggaATATAGagaagatagaaagatagatataTAGAAAGCGAGGGAAattacagtgttacagcagTAGTAGAAAAACCAGCATTTACAGATCAAAATAAATACCGag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368791 True 624 lncRNA 0.40 2 20376013 20376698

Neighbor

gene id symbol gene type direction distance location
park7 park7,LOC107657982,LOC107701995 coding upstream 87259 20278572 ~ 20288754 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding upstream 138610 20179908 ~ 20237403 (+)
slc45a1 slc45a1,LOC107654425 coding upstream 322867 20041339 ~ 20053146 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding upstream 353024 20004405 ~ 20022989 (+)
si:ch211-193i15.1 LOC108254870 coding upstream 481593 19883826 ~ 19894420 (+)
akr7a3 akr7a3,LOC108255199,LOC108431624,LOC108431625,LOC107706545,LOC102201483 coding downstream 81595 20458293 ~ 20465550 (+)
nab2 LOC108255101,LOC108431520 coding downstream 119198 20495896 ~ 20507184 (+)
cnpy2 LOC108255003 coding downstream 157429 20534127 ~ 20538632 (+)
ankrd52b ankrd52,LOC108255001 coding downstream 170194 20546892 ~ 20576360 (+)
LOC113538122 LOC108255274 coding downstream 220054 20596752 ~ 20603064 (+)
G311246 NA non-coding upstream 265789 20109961 ~ 20110224 (+)
G311232 NA non-coding upstream 304654 20070973 ~ 20071359 (+)
G311227 NA non-coding upstream 319439 20037205 ~ 20056574 (+)
G311220 NA non-coding upstream 347701 20027896 ~ 20028312 (+)
G311225 NA non-coding upstream 379743 19996064 ~ 19996270 (+)
G311407 NA non-coding downstream 19056 20395754 ~ 20396286 (+)
G311414 NA non-coding downstream 38886 20415584 ~ 20416179 (+)
G311447 NA non-coding downstream 96125 20472823 ~ 20473797 (+)
G311446 NA non-coding downstream 97198 20473896 ~ 20475687 (+)
G311471 NA non-coding downstream 143163 20519861 ~ 20521808 (+)
errfi1a errfi1 other upstream 198741 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 507532 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 592088 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 858835 19508189 ~ 19517178 (+)
svbp NA other upstream 877342 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 431160 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 493954 20870652 ~ 20882365 (+)

Expression


Co-expression Network