G310882


Basic Information

Item Value
gene id G310882
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19811438 ~ 19811735 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU368221
actcACCAGGCCCCGTGTAGGACATGCCAGCCAACTGTGTGATGGGGTGTGCGAGAAGAGGCTGCAGAGCTGCGAGGAGCAGAGCGCAGGAGAGGACCGCTTTACACAGCATCACTTCAGCTGATGATCcacactctctgtctttctccgcTAATAAACGCAAGGCCTTATATACGCCACGAGGTGTCAGATCACCTGTCCATCCCTAACATcacctctccctccctctctgtcacccttttttttatcttatcaTGTGTCACTGCTGGATCCCGGTGCACACTGTAAATCCACAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU368221 True 298 lncRNA 0.53 1 19811438 19811735

Neighbor

gene id symbol gene type direction distance location
per3 per3 coding upstream 2117 19787821 ~ 19809321 (+)
LOC113538092 camta1 coding upstream 49186 19535411 ~ 19762252 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding upstream 447455 19349748 ~ 19363983 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding upstream 468375 19337932 ~ 19343063 (+)
mfsd4aa LOC108254837 coding upstream 751895 19042582 ~ 19059543 (+)
si:dkey-264d12.1 LOC108254813 coding downstream 4171 19815906 ~ 19834429 (+)
si:ch211-193i15.1 LOC108254870 coding downstream 72091 19883826 ~ 19894420 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding downstream 192670 20004405 ~ 20022989 (+)
slc45a1 slc45a1,LOC107654425 coding downstream 229604 20041339 ~ 20053146 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding downstream 368173 20179908 ~ 20237403 (+)
G310870 NA non-coding upstream 94109 19717081 ~ 19717329 (+)
G310828 NA non-coding upstream 250048 19561183 ~ 19561390 (+)
G310686 NA non-coding upstream 689382 19090382 ~ 19122056 (+)
G310703 NA non-coding upstream 698411 19110129 ~ 19113027 (+)
G310680 NA non-coding upstream 725931 19082369 ~ 19085507 (+)
G310880 NA non-coding downstream 23944 19835679 ~ 19836564 (+)
LOC117599874 NA non-coding downstream 27686 19839421 ~ 19848284 (+)
G310905 NA non-coding downstream 88143 19899878 ~ 19905766 (+)
G311204 NA non-coding downstream 149366 19961101 ~ 19961315 (+)
G311207 NA non-coding downstream 150779 19962514 ~ 19963668 (+)
vamp3 vamp3 other upstream 27513 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 294260 19508189 ~ 19517178 (+)
svbp NA other upstream 312767 19494758 ~ 19498671 (+)
G310681 LOC108254836 other upstream 723632 19087025 ~ 19087806 (+)
snrpe snrpe other upstream 1119424 18687397 ~ 18692014 (+)
si:dkey-264d12.5 LOC108254816 other downstream 36732 19848467 ~ 19868481 (+)
errfi1a errfi1 other downstream 307648 20119383 ~ 20177272 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 996123 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 1058917 20870652 ~ 20882365 (+)

Expression


Co-expression Network