G312195 (akirin1,LOC102785600)


Basic Information

Item Value
gene id G312195
gene name akirin1,LOC102785600
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 180593 ~ 183042 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU369805
cggaCGGTGAGCTGGGGTTGGAGCTCTCAGCAGCGCCGCTCGTCTCCGCCTGGTTGAAGGCTCCCTCCAGCTGCCGTCGCCGTTGGTAACGACTGTACTCCTGCCGAATGTTCTGGAAGATCTGCTCTGGAGTTAGCCTGTGCTCCCCGCTCGTGGCCGGGGGGGACACCGGGGTGGCGGGGCTCTCGGGCTGCGGTCTCAGGCTGCACCTCTGCGGGGAGGGAGTCGCGGCGGCTCCGGCTAGCGGGCTGCACCTCCGGCGCTTCGGGGACTGAGGGCCTAAAAGGGCCTCAAACTCCATGGAGCGTTTTAACGTCGCACCGCACGCCATGTTTTCACCAGAGTGGATAAAATCACAGCCGAGTTTTCAGGGCTTTTAAAATCCCAAATGTTCCGTAAAACCTCCGATTTCcgctttctctctccctcagccCGTCTTTCTCTCCGCAGGTCTCTTTATTAGCTCCGCGCTCAGGTTAGCTCC

Function

symbol description
akirin1 Predicted to enable transcription coregulator activity. Predicted to be involved in several processes, including myoblast migration involved in skeletal muscle regeneration; positive regulation of lamellipodium assembly; and positive regulation of macrophage chemotaxis. Predicted to be active in chromatin and nucleus. Orthologous to human AKIRIN1 (akirin 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU369805 True 484 lncRNA 0.61 2 180593 183042

Neighbor

gene id symbol gene type direction distance location
kpna5 kpna5,LOC107552832,LOC107711738 coding upstream 148738 21279 ~ 31855 (+)
rwdd1 rwdd1,LOC107587776,LOC107704860,LOC107700695 coding upstream 172258 4175 ~ 8335 (+)
LOC117595741 LOC108280375,LOC108280376 coding downstream 34885 217927 ~ 543043 (+)
dop1a dopey1,LOC107587763,LOC107704948,LOC107597122 coding downstream 56236 239278 ~ 272041 (+)
me1 me1,LOC108280372,LOC107700750,LOC107587764,LOC107704946,LOC107716854,LOC106583951 coding downstream 154293 337335 ~ 388347 (+)
usp45 usp45 coding downstream 274099 457141 ~ 488658 (+)
LOC113543344 LOC108280269 coding downstream 322585 505627 ~ 522026 (+)
G312194 NA non-coding upstream 619 179675 ~ 179974 (+)
LOC113525279 NA non-coding upstream 16499 160505 ~ 164094 (+)
LOC113525271 NA non-coding upstream 59115 116132 ~ 121478 (+)
G312179 NA non-coding upstream 67485 112817 ~ 113108 (+)
G312177 NA non-coding upstream 68135 111771 ~ 112458 (+)
G312175 NA non-coding downstream 4063 187105 ~ 188110 (+)
G312237 NA non-coding downstream 299885 482927 ~ 483213 (+)
G312221 NA non-coding downstream 391199 574241 ~ 576923 (+)
G312280 NA non-coding downstream 528452 711494 ~ 712297 (+)
G312277 NA non-coding downstream 532597 715639 ~ 759328 (+)
G312191 NA other upstream 5052 174238 ~ 175541 (+)
G312172 NA other upstream 85668 93899 ~ 94925 (+)
G312171 NA other upstream 87678 92484 ~ 92915 (+)
pnrc2 pnrc2 other downstream 6497 189539 ~ 193534 (+)
snap91a snap91,LOC108280370 other downstream 91780 274822 ~ 318962 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other downstream 230577 413619 ~ 501389 (+)
LOC113543349 iws1 other downstream 521736 704778 ~ 717291 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other downstream 637488 820530 ~ 847017 (+)

Expression


Co-expression Network