G313817 (sall3,LOC108435487)


Basic Information

Item Value
gene id G313817
gene name sall3,LOC108435487
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3313304 ~ 3315092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU371730
AACTGGTTCTCCTCTTTAACATAAGGCCTGGCAGGCTGAGCAGCTGTGAGGTCTAGCACACCAGTGTGCTCAGCTGGTACAGAACCTGGAGATGGTGTGTCTGACTTTTCTGACTTCACAGTCGCTATAGCTGCACTGGAGTCCTGGATATCCTCGGCTGCATTACTGCTGTTGTTATTGACCAGACCTGGAGACCTGGAACGATGGCTCTCAGGCTGACTATGAGCAGGCGAAAGAGCCTGCATAGAGCCTGATGACTCAGACAGGGCTGGACTCCCCACACTGTGGTTCTCTAAGTCTCCCATGGCAGAGGATGAGTCGTTGTTAAACACATCTCCACTTTCTCCACCAATCCCACTTCCATTCTCAGAGGGCTTGAGGCTAAAGGCGCGGTTCATATTTGCTGTTGAGTCAATCATCTTCATTTGGTTTTCCAAAGCAGCAATGCTGGAGATGACCGGAGTTGGGGGAGAGTTGCTAGGAGACATCTCTCCATATGAATGTGCTGGTTTTGATGGGTCCACATCTCCATCTTTGACATCTGCTTCATCCTCTATGGCCTGTTCCATCTCATCAATCAGCTCATCATCATAATTGCTCATGTTGTCTACACTCTTCTCATCAAAGTTAAAATCTGTGTCCATGTCTTGAAAGCCCTCAGGAAGAGGTGTGTTTGGAATCTGACCTCCCATGTGCATGCGGATATGCTGTTGCAACACTACAGCATTAGTAAACTTCTTCTGACATATAGGACATGAGTGCTGCACTCTTAGAGGTGGCTTAGACCTGTGAACCCCAAAGTGCGTTTTCAAGTTGCCCTTAGTAGTGAAAGCACGGCCacatattttgcatttaaaaggCCTTTCCCCAGTGTGGATACGGTAGTGCATCTTGAGGGCACTCTGACAGCTGAGCACACGATGGCAGATGACACATTGGTTGGGGTCTGTCATCTTTTTGTCAATGTTTTCCACCAGCTGCTGCAGCTTTGAGGTTTCTGATGTTTGCATAGAGTCCAGGAGGCCACCAAAGGGAAACTTGGCCTTGAATTGATCTGAGATCATTGGAAGGGCAGAATGCGAGCCAGAGGTCGGAGGAGTCACTGGATCTGTGATCTGGGTGGTGGTAGTGGTTGTGGTAGTGGTTGTGGATGACAGCACAATCTGGCTCACAGTAGTCAAGGGCATGCTGGTCTCTCCAGGTCTGGTGGTACAGTTGGATGGCAAATGAATCCCCTCTGGCTTCAAAACTGGGGGTGCATCACTCCCCATGGTGGGCTGTGGAGATGCCGAAGTGAGGGTTGTGCTTACTTCAGTACTGAGAACATTGGGTGACAGAGATGCACACTCACTTGAgggtggtgatggtcttggaggtGACCTGCTGATGGGAGTAAGACTAGGCGAATCTCCATACCCCCCTATCATACTGGGCAGGGTTGGGGGAAGCTGCAGCCCCACTGAGGTTGGGGCTGTGGACAAAACAGGCTTGCTGTCTAGCCATGTGGTAACAGGCTTCTCTGGAGGCAGCGACATGCCATAAGGAATGCCTGAGCTGGTTGGCACATTGTCCAGGTACTCAGGCACTGGATAGGGGTTCATTGGAATGTGTGGGTACTTTTCTTTGTGCCTCTGGAAGTGGACCTTCAAGTTTCCTTTTGTAGAGAAGCGATTACCACAAATGTTGCACTTGAAAGGCCTTTCACCAGTATGTGAACGAAGGTGTATTTGAAGGGCACTGTCACTTCCAAACACCTTAGCACAAAACCTACATTTATGTTTGAAAAAGG

Function

symbol description
sall3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within limb morphogenesis; negative regulation of smoothened signaling pathway; and olfactory bulb interneuron development. Predicted to be active in nucleus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU371730 True 1789 TUCP 0.49 1 3313304 3315092

Neighbor

gene id symbol gene type direction distance location
LOC113543356 NA coding downstream 221537 3087985 ~ 3091767 (-)
rreb1b LOC108280554 coding downstream 236953 3032571 ~ 3076351 (-)
riok1 riok1,LOC102776549 coding downstream 281795 3020000 ~ 3031509 (-)
pip4k2ab pip4k2ab,LOC108280881,LOC108444221,LOC103035282,LOC107585365,LOC107688442,LOC107722628,LOC107718096,LOC107689402 coding downstream 302092 2988255 ~ 3011212 (-)
dnajc1 dnajc1,LOC107589882,LOC107689420 coding downstream 344414 2963034 ~ 2968890 (-)
prdm1a prdm1 coding upstream 214388 3529480 ~ 3544418 (-)
trnas-aga_15 NA coding upstream 311274 3626366 ~ 3626447 (-)
sri sri,LOC108280385,LOC108444548,LOC107581690,LOC107697281,LOC107714428 coding upstream 316150 3631242 ~ 3638048 (-)
bmper bmper,LOC107697278,LOC107661004,LOC107551747 coding upstream 349080 3664172 ~ 3687875 (-)
bbs9 bbs9 coding upstream 419743 3734835 ~ 3805562 (-)
G313811 NA non-coding downstream 10347 3302726 ~ 3302957 (-)
LOC113543292 NA non-coding downstream 15207 3246172 ~ 3298097 (-)
G313704 NA non-coding downstream 384601 2834493 ~ 2928703 (-)
G313706 NA non-coding downstream 464658 2848174 ~ 2848646 (-)
LOC117599940 NA non-coding downstream 567225 2743543 ~ 2746079 (-)
G313818 sall3,LOC108435487,LOC102796582,LOC102314634 non-coding upstream 1071 3316163 ~ 3317854 (-)
G314094 NA non-coding upstream 151437 3466529 ~ 3480853 (-)
G314139 NA non-coding upstream 211043 3526135 ~ 3526346 (-)
G314152 NA non-coding upstream 328900 3643992 ~ 3648552 (-)
G314143 NA non-coding upstream 345385 3660477 ~ 3663984 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 424634 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 601139 2669218 ~ 2712165 (-)
G313307 dsel,LOC108432253 other downstream 988738 2319769 ~ 2324566 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 1967727 1272541 ~ 1345577 (-)
rbm33b NA other downstream 2261705 1005251 ~ 1051599 (-)
fbxl4 fbxl4 other upstream 1485388 4800480 ~ 4817171 (-)
LOC113543250 znf236 other upstream 1647973 4963065 ~ 4996005 (-)
trnat-agu_14 NA other upstream 1905369 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 1905851 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 1906670 5221762 ~ 5221835 (-)

Expression


Co-expression Network