LOC113543250 (znf236)


Basic Information

Item Value
gene id LOC113543250
gene name znf236
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4963065 ~ 4996005 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372807
aggagcATGAGTTTGTCCACACGAATGGTCCGTCTCTGAGCTCTCAAAAGCCGCGCgtgttcaggtgtttcagctgTGAAAAAGCATTCGCCAAACCAAGCCAGCTGGAGAGACACatccgcacacacacaggTGAGCGGCCCTATAAGTGTGAGCAGTGTGATAAAGCGTTTAATCAGAAGAGTGCGCTGCACATACACACCGTCAAACACACCGGAGAGAAGCCTTACAAGTGTGAGGTGTGTAGCATCAGCTTCACGCAGAAGAGCAACATGAAGCTTCATATGAAAAGGTCACATGGCTTTGgtAAGCAGACGGAGGAGGGAGTGGAGGCAGACCGAGAGCAGGAGTGCATTTCGGAGGCAGCACAGGCTCCGCCTCCCAGAAACGAAACTCCAGCAGGACTGCAACTGCACACAACAGAACAGGAGACACCGTCAGACTGGCAGTGTCCCATCGCCAACGTCTTCCCCTAAGCCCTAACCACACACAATTCtccactacaccctacacactcaTCTGCTGAAGTCTACTCAGTCTGAAATCTACAGCCCCGCCCCCTACACCACAGAGTCATTcactaaaccctaaacactCATCCTCTACTTCCTATGCATCATCTCTTCTATATCCGTATCATCTATTCATCATACATCTCATCTGCACTCTCTTTCCATATATgtccccaacacacacatacgcacactcATTCTCTCCGGTCATTATGCCATTCATGCACATATTTCAAGTTACACACACTTCGAAACACCGTCTAACATTCTCAAGGTCAGATTTGCAAGCTTTTTATCAGTCAGAGTTCAAAGTGATCAATGTCTCATTATAAACCCCTTAAAGCCTAGAAAATTCA
>XM_034314894.1
TGTAGTGACGAACAGCGGCCGCCATTTTGAAATCGTTCACAGTACACCTCGGCCAAAGCTGGAACTATGCCGCGGGGCCGGCCTCGAAAACACAGGGATAACACTGCCAACGCAGGAGATGGAGGAGAGGAACCGAGGGTGGAGAGTGCGAGCAGCGCTGAACATCGTTGCAGTATCTGCCCTCTTACCTACAGCACCGAGAACCAGCTGCTCAAACACCTCAGAGAGCATGAAGCTAACGACAAGCCTCACCGCTGCGATAAGTGTCCCCAGTCGTACAACGTGGAGTTTAACCTCAGGCTGCACAAGTCGATTCACAGCACGTCCGAGCCCACCTGCCCGGTGTGTGAGAAAAAGTTCACCCGAGTCGCCAGTCTCAAATCTCACATCATGGTGCATGAGAAagaggagAATCTGCTGTGCTCGGAGTGCGGCGATGAGTTTGTGCTGCAGAACCAGCTCGCCCTGCACCTGGAGGAACACCGGCGAGAACTCTCCGGAACCCGAGTTTTTACCTGCAAGACCTGCAGCGCCGAGTTCCCCTCGGCTAGTCAGCTGAAGGAGCACAACCGCACCCATGCAaagatcagGGCTGTTGTGAGCAGCTCACGGAACTACAAGAGGAACATTGACCGCAGCGGTTTCACCAACACCTGCCATCACTGCGGCAAGACGTTTAAAAAACCCAGCCAGCTTGTCCGACACATCCGCAttcacacaggaGAACGGCCGTTCAAGTGCACACACTGCGGTAAGGCTTTTAACCAGAAGGTGGTGCTGCAGACTCACATGGTGCGACACACCGGCGAGAAGCCACACCTCTGCATGCTATGCCCCGCCTCCTTCTCTCAAAAAGGAAATCTGCACTCACATGTACAGAGAGTGCACTCTGAGacTGCAGGCGTCCCCGTGTACCCGTGTATGGACTGTAGCTGTGTGTATAAGAAGCTGGGCAGCCTGAACGCTCACATCAGTAAAATGCACATCTCCATCATGGAGGTGGAGGAGTCGCCCagcacacagGAGGGGGCTGAACCTGGGCAGACAGGAGGTGGGACAGAAGGAACGGAGGGCGTGACCGATGTGATCCAGCAACTGCTGGAACTTTCAGAACAGGTAACGAGCGACAGCGCTCAcgctccaccccctggaccaGCTATCACCATGGAGACAGCTATCAATCAAGATATCTTGCAGcaAGCCCTGCAGAACAGCGGTCTCAGTTCGATCCCAGTTCAGTCAGATGCTCAGGGCAACGCTGCAGTTCCTCCACTCACCACAGAGGGCGCCAACACCCACCCAGCTCACATCCACAAGCCCACAGGAACCTCACcacacaaactgctgaaaaaggaGAAGAGGAGCATCTTTAAAAAGAATGTACAGTTTCCtgGCACTATCAGGGAGGAGTGTGGAGTGCGCTGGCACGGATGCCCATACTGCTGTAAGGAGTTTAAGAAGCCGAGTGATCTGGTGCGTCACAtccgcatacacacacacgagaagCCGTACAAGTGCGCACAGTGTTTCAGAGCATTCGCTGTGAAGAGCACGCTCACtgcacacaccaaaacacactcCGGCATAAAGGCCTTCCAGTGTACACACTGCAGGAAGAGCTTCTCCACCTCCGGCAGCATGAAGGTGCATATGAGGCTGCACACAGGTGTGCGGCCATTCCCATGTCCACACTGTGATAAGGTCTTCCGGACATCAGGTCATAGGAAGACGCACATCGCCTCACACTTAAAAAATCTGCTGcagaaaaagcacaaattccCACGGAAACCGAACCGAGCACGCGTCTCCAAACACAACCTACCGCTTCCTGATATACAACTCCAGGAGCCCATCCTCATCTCTGACCTGgGTCTGCTGCAGAATCAGAACTCACGTGCTGCACTTCAGCAGTATCTGGACATCGTGGAGAATGAGCGGCCGTACAAGTGCACTTTCTGCAACAAAGCGTACAAGAAGTCGAGCCACCTCAAACAGCACGTCAGGTCGCATACAGGTGAGCGGCCGTATAAGTGTGTGCAGTGCAGCAAGGGTTTTGCGTCGTCAGGTGTGTTGAAGGCTCACATCCGCACACACTCTGGCCTGAAGGCGTATAAGTGCCTGCTGTGTGACACTACCTTCACCACCAACGGCAGCCTGAGACGCCACATGACCACGCACAGCGACCTTCGACCCTACATGTGCCCTTACTGCCAGAAAACCTTCAAATCCTCCCCCAATTGCAGAAAGCACATGAAGACACACAGGTATGAATTGGCTCAGCAGCTTCGACAGCAGCAGGGCTCATCTGAAGCTCCGACTCTGGAAGATCCAATGGGAGGGGCCAGTACTGTGGAAGTTCCCAATGGGTGGAACCAGTGCAGTAGAAGACCCAATGGTGGGGCTAACACAGTAACCCATGACCTGCAGGTAGGAGCAGCAGGATTGGCCACATCCAGTTCCATTATGGGGGCGGAGCCTCAGACCATGATGCAAGTGGTGAGCGGAAACCAGACGGTGGCGCTAGGGGAAGCGCCTATGGTACAGGAtgcagAGTCATTTGTGAACGCGCAGCACATCAGCCAGTACGGGACACAGACCCTCCAACAACCTGCATATGACCAACCTGCACTGACACAAGGTTTCTCCATCTCCGAAGGTTATACCCAGCATCCCACTCTTTCCTCGGTACAGCAGCTGCAGGATTCGAGCACGCTGGAGTCGCAGGCACTAAACTCCACTTACACACAGAGCTTACTGAACGTGCACAccacagagacgACTGTTTTGCTACAGGATTCAAATCGGACGGATTAtcaggatgaggaggatgaggaggagaacAGCAAGAGGACTTACAGGTGCAATGTGTGCGATAAAGGCTTTAAGAAGTCAAGTCACCTGAAGCAGCACATTCGCTCACACACTGGTGAGAAGCCATATGGCTGCAACCTGTGTGGGCGGAACTTCGTCTCCACCGGCGTTCTCAAatcacacctgaacacacacacaggtgtgaaggcatttaaatgtaatgtgtgtgactCCTCCTTCACCACTAACGGCAGCTTGAATCGCCACATGATCATCCACCTTAACACAAAGCCGGTCCGATGTACTCTGTGTGAGCAAAGTTTCCGCACACCCCTGCTACGCCGCAAACACATGAAGCTCTTTCATGCTGTCGGGCCCAGAGTTCTGGACGGAGATGAAGCAAGTGTGGAAGTTGATGTTGGGGACCCCTCGCTGGCGAAGAGGATCAGGTCGGGCATCATCACGTTTTCAGAGGAGCAGACGGCCGAGCTGGCTCAGAGTGATCCGGGTAATGATGCCTCGGTCTCTGAGAAGGTCCTGATCCAGTCAGCTGCAGAGAGAGATCGCATCAGCGAGATCAAGGATAAGAGCACGCTGGAGCTTGAGCCCAAGTTCCCTAATCGCTGCCAGTATTGCCCAAAGAGCTTCAAAAAACCCAGCGACCTTgttagACATGTCCGAATTCACaccggagagaagccgtataagtgtgatgagtgtgggaagagtttcacGGTGAAATCCACACTTGATTGCCACATCAAAACACACTCAGGTCAGAAGCTGTTTACGTGCCACATGTGCAGCACAGCGTTTTCCACTAAAGGCAGTCTGAAGGTGCACATGCGCCTGCACACCGGCTCCAAACCCTTCAAATGTCCCTACTGCGATCAGCGTTTCCGTACGTCCGGACATCgcaaaacacacatgcagtgcCACCTGAGGCCCAGCACTGAGAGCAGGAAGTCCAGACATTCCGCTCAGAGCCATGTCACTGCCCAGAATGCACCGGGCCAGGAGGCTCCACCCACCGCAGCCGAAGCACTGCCTCCAGTGGGCCTCCTGCATAGTGCGGGTGCTGACCCGAACATCTACATCCACAGCAACCCAGTCCTGACAGGACAGTATGACCCAAACCTGCTGCAGCAAGGCATCGTGGGACAGACTATCCTTCCAGCTACCATGTCAGcgagTGGTGACCTGACAGTGTCCCTAACAGAAGGTTTGGCCACATTAGAGGGGATTCAGCTGCAGCTCGCACCAACAGGCCTGCTTTGTCCCAACGTCCAGATATCCGGCATCGATACGgccaacatcaacaacatcacaCTGCAGATTGACCCTAGTATCCTGCAGCAGACTCTACAGAGCGGTGTATTAAGTATTGACTCCACCTTGTCATCCCACGCCAACGCACACCTGCTGGCCAGTGATGCTGCAGGACACACTAATGTTGTGATCCAGAACCCGAGCGTTACCATCGGCAACCTCACAGAGCAGGAACACGCAGgctcgGAGCAGTTGGCTCAGGTGGTCGGAGCACCGGCGCTGGTGGGGAACGGCAGTTCAGGAGCACCGGAGATCACACTCACCATCAGcaactcacatgcacacactctccCCCAAacacagactgacacacacactcataccacTAATACCAACACACTGGCCAATAGCAACCAAGAGATCACACTTACTATATCagGTCAGGATCTGTTGCCTCCACCATGTGCAGGTGCAGGAGTGGAAATGGGCGGGGCCTTGAGATTGACCACACCTCCCTCCAGCAGCAACTCTCTGGCTCTCAGCTCTGAGCAGCTCCTCACCCAAAGCACCGCCCCCTCCAGCATGGCAGTTACCACTCTGGCTCCCAGCACCTCTCTTTCCCAGAACATGTCGATGTCATCAGGGAGCGTGACCACTGACAGCAACGTCACACTTGCATTGGCGGATACACAGATGCTGGACACAGTTACACTGAACCTCAACACACAGggtCAGCAGTTCCCAGCTGTGGTGTGTGAGGAGGCATCATCAGTGCAGCCGGCAAGCATGACTCAACAGGGTATACCTCAGTCAGAGGAAACCAAgGTGGCGAATCAGTGTTTCTACTGCAGTATGGAATTCTCCTCAGCGACCATGCTGCGCCGCCACTGGAGGATAGAACACGGCAAAGAACGCTGCTACGTCTGCGGTGTGTGTAACAAGGCCTTCAAACGACAAACACACCTCAAGgagcATGAGTTTGTCCACACGAATGGTCCGTCTCTGAGCTCTCAAAAGCCGCGCgtgttcaggtgtttcagctgTGAAAAAGCATTCGCCAAACCAAGCCAGCTGGAGAGACACatccgcacacacacaggTGAGCGGCCCTATAAGTGTGAGCAGTGTGATAAAGCGTTTAATCAGAAGAGTGCGCTGCACATACACACCGTCAAACACACCGGAGAGAAGCCTTACAAGTGTGAGGTGTGTAGCATCAGCTTCACGCAGAAGAGCAACATGAAGCTTCATATGAAAAGGTCACATGGCTTTGgtAAGCAGACGGAGGAGGGAGTGGAGGCAGACCGAGAGCAGGAGTGCATTTCGGAGGCAGCACAGGCTCCGCCTCCCAGAAACGAAACTCCAGCAGGACTGCAACTGCACACAACAGAACAGGAGACACCGTCAGACTGGCAGTGTCCCATCGCCAACGTCTTCCCCTAAGCCCTAACCACACACAATTCtccactacaccctacacactcaTCTGCTGAAGTCTACTCAGTCTGAAATCTACAGCCCCGCCCCCTACACCACAGAGTCATTcactaaaccctaaacactCATCCTCTACTTCCTATGCATCATCTCTTCTATATCCGTATCATCTATTCATCATACATCTCATCTGCACTCTCTTTCCATATATgtccccaacacacacatacgcacactcATTCTCTCCGGTCATTATGCCATTCATGCACATATTTCAAGTTACACACACTTCGAAACACCGTCTAACATTCTCAAGGTCAGATTTGCAAGCTTTTTATCAGTCAGAGTTCAAAGTGATCAATGTCTCATTATAAACCCCTTAAAGCCTAGAAAATTCAacagtttaataaaatgctgcaagaagttcagtgaaaaaagtttattttttttttttttttttttaaatcttctccAACAGACTGTATAAGTGGCAGTGTTTTATTGATAAAATCAGGATTGGATTTCTTAAAAAGGCCattatgttatataatatggttatatttgtataaagcattttttttttaatcaatgtattgtcatgtgtaaataatttataggCAAGACATGCTCATATCAGTGATAAAACCTCATTTCATTGATGGCTTTGCCAGTGTATAAACATTAAGCTGTATAC

Function

symbol description
znf236 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF236 (zinc finger protein 236).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372807 False 868 lncRNA 0.48 3 4963361 4965995
XM_034314894.1 True 6211 mRNA 0.52 33 4963065 4996005

Neighbor

gene id symbol gene type direction distance location
LOC113543211 galr1 coding downstream 78984 4868536 ~ 4884081 (-)
pnisr pnisr coding downstream 108268 4846889 ~ 4854797 (-)
coq3 coq3 coding downstream 118921 4840757 ~ 4844144 (-)
faxcb faxc coding downstream 123119 4831177 ~ 4839946 (-)
mms22l mms22l coding downstream 224205 4716183 ~ 4738860 (-)
LOC113543037 tshz1 coding upstream 22842 5018847 ~ 5028500 (-)
znf407 znf407,LOC104948785 coding upstream 47491 5043496 ~ 5056218 (-)
otol1b otol1,LOC107734882 coding upstream 77159 5073164 ~ 5079638 (-)
nmd3 nmd3 coding upstream 105585 5101590 ~ 5117234 (-)
smc4 smc4,LOC107720450 coding upstream 232141 5228146 ~ 5249124 (-)
G314692 NA non-coding downstream 162654 4798636 ~ 4800411 (-)
G314617 NA non-coding downstream 175643 4787207 ~ 4787422 (-)
G314616 NA non-coding downstream 179294 4783551 ~ 4783771 (-)
G314503 NA non-coding downstream 385733 4512018 ~ 4577332 (-)
G315019 NA non-coding upstream 136361 5132366 ~ 5211323 (-)
G315067 NA non-coding upstream 215668 5211673 ~ 5211906 (-)
G315021 NA non-coding upstream 215952 5211957 ~ 5216588 (-)
G315069 NA non-coding upstream 223544 5219549 ~ 5219829 (-)
G315075 NA non-coding upstream 231223 5227228 ~ 5227617 (-)
fbxl4 fbxl4 other downstream 145894 4800480 ~ 4817171 (-)
G313817 sall3,LOC108435487 other downstream 1647973 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 2074395 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 2250900 2669218 ~ 2712165 (-)
G313307 dsel,LOC108432253 other downstream 2638499 2319769 ~ 2324566 (-)
trnat-agu_14 NA other upstream 224456 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 224938 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 225757 5221762 ~ 5221835 (-)
limk1a limk1,LOC107663742 other upstream 1597264 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 2569076 7565081 ~ 7568134 (-)

Expression


Co-expression Network