pnisr (pnisr)


Basic Information

Item Value
gene id pnisr
gene name pnisr
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4846889 ~ 4854797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941174.2
GCCATTCAAACACATCCGGGTCGCTCAGCGCAAAGCACTTCCGGGTTATTAAGTAATCGCCATTTTCTGTGCAGGCCGCATCAGAGGCTGAGTGTGTTGAAGATCGGAGATGTGGGACCAGGGAGGGCAGCCCTGGCAACAATGGCCTCTGAGTCAGCAGCAGTGGATGCAGTCGTTCCAGCATCAGCAAGATCCAGGTCAGGTGGACTGGGCCGCTTTAGCTCAGGCATGGATCGCGCAGAAGGAGTCGAGTGGCACCGTGATGGAGCAGCAGCCGCCTAACGGACAGGACGCTGCAGGACTCGACACTCATAACAATCACTCAAACTTTCAGAATGACTCCAGCTTCAACAGGATGTGGCAGCCGGAGTGGGGGATGCACAGccagcctcctcctcctccgccgcCTCCCACAGATCAGACGTGGATTCCTCCAGCTCCAGCGCCAATGGACATCGTGAATCCATCCGAGGACAGTAACAGTCAGGACAGCGTCGAGTTCACCAGCGACCCGCATCACGTCTTCAGCCAGAACAGTCACGGGTTCAACAGCGGGCCGGGACACTACCCCGTCGCTCCGATGGCAGTCAACCAGTTCGATTATCAGCACGGAGCATTCGGACCCACTGGCACTGGGTTTCCCCCACCGTTTTGGCCCGATGGCCCCCAGAACAGGCGAGACAGGATGCCGGGATTCAGACCAGACCAACCCAGATCGCCCGGGCAGATGGGCATCAAAACAGAAGCACCGGTTATCGATGCCGTGAAAAGGCGCACTCTGCCTGCATGGATTCGAGAAGGCCTCGAGAAAATGGACCgagagaagcagaagaagctGGAGAAGGAGAGGATGGAGAAAGAGCGTGCAGAAATGGCTCACGAGGAAAAAGACAACGATGCagcagaggaggagggagaCGGAGTTCGGCTGCCACGCAAGAGCAAGTTTGACAGTGATGATGAGGATGGCGATGAAGGTGAAGACGCAGAGGAAGGCGTTGTGGTGAAAATCCCATCTCCTGTACATGAGGAGCAGAGCGAACCGGAAATGACGGAAGAGGAGCGAGAGTTTCAGCTGATGCTGCTGACCAAAACGCTTCTGACCGAAGTTCTGCTCGAGGTGACGAATGAAGAAATCGTCCGCGTCGCCTTGGAGACGCATCGCAAAGCCAGCAAAGCTCCTGCAAAACAGCTGGCACAGTCCAGTGCACTGgcttctctctcctccctcgGCGGCCTTGGGGCATACGGATCAGACGAGAGTGAGGATGAGCGTAGCGTGAAGGGCTCGGACTCGTCTGATACGGATGAAGAGGAGCTGCGGCACCGGATTCGTCAGAAACAGGACGCGTTCCGGCGCAAGGAGCAGGAAAgacaggagctggaggagcaTGTTATTACTAACCCAGAACCCCCAGGCCTAGGGagcagagaaagggagagagagagtcatgaGGAAGAGCAGTCAGAttccaaacacaaacaggaagttaaGGATAGGGAGGTAGAGTCAGGCCAGAGGTCAGAGGTTAGTGAGGTCAAGCATTCAGGGTCACGCCGCAGCCGCACTTCCTCCTCCAGCtcgtcttcctcctcttctgtgtcatcatcttcctcctccacGTCCTCTTCCTCTTCGTCCCGTTCTTCCTCTCCGCGCAGGAAGAGGCGGCGCAGTCGCTCAGCTTCACGTGGGAATCGCAGGCGCAGTCGCAGCCGCAGTCGGAGTTCCCGCAGGAATCATTCAGAGCGCGGTGACAGGGAGAGGAGACGGAGCAGTCGAGACCGGAGCTCTGCTCGCTACAGGAAGCGCAGTCGCAGCCGTGATAGACGGCGCAGTCGCAGCCGCAGCCACAGTCGAAGGAAGAGAACGagaagcagagacagagagaggaggaaagagaggagCCCAAGCCgtgagaaggagaagaagaaaagagacaaGGAgctagagaaaaagaaagacaagcaAAAGgcaagagagaaggaaagggaaaaggaaaaggagagggaaagagagcgagaaagggaacgagaaagagagagggatgcTAGCTCAGccagagaggaggagagcagaTCGAAGAAGAAGCGGCGAGAGAGCGACACCATTTCCCGACAGGACAGCAGGTCTAGTAGAAAGAGTTTGACCAAATCAAACAGGAAGTACTCGGACTCTGACTCCAGCAGATCCCCGTCCCCCGAGGTTAGCAAAGgcaaaaagtctaaaaaaaacaaacgtaGTCGATCAAGGTCAACGGAAAAATCGCACAAGTCTGGTAAGAAGGCAAGCCGCAAACACAAGTCTAAATCGCGATCAAGGTCGAACTCCCCGAGCCGTCGCAGGCGCTGAGGATTCCTGCGCTTTCtcacttattttaaaattccATGAGTTTAAGGGGCGTGTCTCGTTATGGAGGCAGCGTTGTAGGTGAACTCTGCACTCAAACCCACACTGTAAATATGTGTTCATTTTTAAGCGATGTCTGTGATATGAAACGTTTTGAACAAAAAGGTTATTTTGGCCTTGTATTATGAAAGACTCAGCATTAGTAGTTGATATAGGATCTCGAAGCTGTAACATTTTAAAGCCCTCGAGACGAGGGAGAGAATTCATCTAATGTAAAGTGTCCAATAAAAtaagaatgcttttttttctgttca
>XM_026941175.2
GCCATTCAAACACATCCGGGTCGCTCAGCGCAAAGCACTTCCGGGTTATTAAGTAATCGCCATTTTCTGTGCAGGCCGCATCAGAGGCTGAGTGTGTTGAAGATCGGAGATGTGGGACCAGGGAGGGCAGCCCTGGCAACAATGGCCTCTGAGTCAGCAGCAGTGGATGCAGTCGTTCCAGCATCAGCAAGATCCAGGTCAGGTGGACTGGGCCGCTTTAGCTCAGGCATGGATCGCGCAGAAGGAGTCGAGTGGCACCGTGATGGAGCAGCAGCCGCCTAACGGACAGGACGCTGCAGGACTCGACACTCATAACAATCACTCAAACTTTCAGAATGACTCCAGCTTCAACAGGATGTGGCAGCCGGAGTGGGGGATGCACAGccagcctcctcctcctccgccgcCTCCCACAGATCAGACGTGGATTCCTCCAGCTCCAGCGCCAATGGACATCGTGAATCCATCCGAGGACAGTAACAGTCAGGACAGCGTCGAGTTCACCAGCGACCCGCATCACGTCTTCAGCCAGAACAGTCACGGGTTCAACAGCGGGCCGGGACACTACCCCGTCGCTCCGATGGCAGTCAACCAGTTCGATTATCAGCACGGAGCATTCGGACCCACTGGCACTGGGTTTCCCCCACCGTTTTGGCCCGATGGCCCCCAGAACAGGCGAGACAGGATGCCGGGATTCAGACCAGACCAACCCAGATCGCCCGGGCAGATGGGCATCAAAACAGAAGCACCGGTTATCGATGCCGTGAAAAGGCGCACTCTGCCTGCATGGATTCGAGAAGGCCTCGAGAAAATGGACCgagagaagcagaagaagctGGAGAAGGAGAGGATGGAGAAAGAGCGTGCAGAAATGGCTCACGAGGAAAAAGACAACGATGCagcagaggaggagggagaCGGAGTTCGGCTGCCACGCAAGAGCAAGTTTGACAGTGATGATGAGGATGGCGATGAAGGTGAAGACGCAGAGGAAGGCGTTGTGGTGAAAATCCCATCTCCTGTACATGAGGAGCAGAGCGAACCGGAAATGACGGAAGAGGAGCGAGAGTTTCAGCTGATGCTGCTGACCAAAACGCTTCTGACCGAAGTTCTGCTCGAGGTGACGAATGAAGAAATCGTCCGCGTCGCCTTGGAGACGCATCGCAAAGCCAGCAAAGGCGGCCTTGGGGCATACGGATCAGACGAGAGTGAGGATGAGCGTAGCGTGAAGGGCTCGGACTCGTCTGATACGGATGAAGAGGAGCTGCGGCACCGGATTCGTCAGAAACAGGACGCGTTCCGGCGCAAGGAGCAGGAAAgacaggagctggaggagcaTGTTATTACTAACCCAGAACCCCCAGGCCTAGGGagcagagaaagggagagagagagtcatgaGGAAGAGCAGTCAGAttccaaacacaaacaggaagttaaGGATAGGGAGGTAGAGTCAGGCCAGAGGTCAGAGGTTAGTGAGGTCAAGCATTCAGGGTCACGCCGCAGCCGCACTTCCTCCTCCAGCtcgtcttcctcctcttctgtgtcatcatcttcctcctccacGTCCTCTTCCTCTTCGTCCCGTTCTTCCTCTCCGCGCAGGAAGAGGCGGCGCAGTCGCTCAGCTTCACGTGGGAATCGCAGGCGCAGTCGCAGCCGCAGTCGGAGTTCCCGCAGGAATCATTCAGAGCGCGGTGACAGGGAGAGGAGACGGAGCAGTCGAGACCGGAGCTCTGCTCGCTACAGGAAGCGCAGTCGCAGCCGTGATAGACGGCGCAGTCGCAGCCGCAGCCACAGTCGAAGGAAGAGAACGagaagcagagacagagagaggaggaaagagaggagCCCAAGCCgtgagaaggagaagaagaaaagagacaaGGAgctagagaaaaagaaagacaagcaAAAGgcaagagagaaggaaagggaaaaggaaaaggagagggaaagagagcgagaaagggaacgagaaagagagagggatgcTAGCTCAGccagagaggaggagagcagaTCGAAGAAGAAGCGGCGAGAGAGCGACACCATTTCCCGACAGGACAGCAGGTCTAGTAGAAAGAGTTTGACCAAATCAAACAGGAAGTACTCGGACTCTGACTCCAGCAGATCCCCGTCCCCCGAGGTTAGCAAAGgcaaaaagtctaaaaaaaacaaacgtaGTCGATCAAGGTCAACGGAAAAATCGCACAAGTCTGGTAAGAAGGCAAGCCGCAAACACAAGTCTAAATCGCGATCAAGGTCGAACTCCCCGAGCCGTCGCAGGCGCTGAGGATTCCTGCGCTTTCtcacttattttaaaattccATGAGTTTAAGGGGCGTGTCTCGTTATGGAGGCAGCGTTGTAGGTGAACTCTGCACTCAAACCCACACTGTAAATATGTGTTCATTTTTAAGCGATGTCTGTGATATGAAACGTTTTGAACAAAAAGGTTATTTTGGCCTTGTATTATGAAAGACTCAGCATTAGTAGTTGATATAGGATCTCGAAGCTGTAACATTTTAAAGCCCTCGAGACGAGGGAGAGAATTCATCTAATGTAAAGTGTCCAATAAAAtaagaatgcttttttttctgttca
>XM_034314781.1
atgcaaacattatATAACAATAACTGGTTATATTTTTAGAATATCTGTAAACAGATTATAAAATGCGGGTTATTGGCGTCGGTGTGTGTCAGGAGGCTGAGTGTGTTGAAGATCGGAGATGTGGGACCAGGGAGGGCAGCCCTGGCAACAATGGCCTCTGAGTCAGCAGCAGTGGATGCAGTCGTTCCAGCATCAGCAAGATCCAGGTCAGGTGGACTGGGCCGCTTTAGCTCAGGCATGGATCGCGCAGAAGGAGTCGAGTGGCACCGTGATGGAGCAGCAGCCGCCTAACGGACAGGACGCTGCAGGACTCGACACTCATAACAATCACTCAAACTTTCAGAATGACTCCAGCTTCAACAGGATGTGGCAGCCGGAGTGGGGGATGCACAGccagcctcctcctcctccgccgcCTCCCACAGATCAGACGTGGATTCCTCCAGCTCCAGCGCCAATGGACATCGTGAATCCATCCGAGGACAGTAACAGTCAGGACAGCGTCGAGTTCACCAGCGACCCGCATCACGTCTTCAGCCAGAACAGTCACGGGTTCAACAGCGGGCCGGGACACTACCCCGTCGCTCCGATGGCAGTCAACCAGTTCGATTATCAGCACGGAGCATTCGGACCCACTGGCACTGGGTTTCCCCCACCGTTTTGGCCCGATGGCCCCCAGAACAGGCGAGACAGGATGCCGGGATTCAGACCAGACCAACCCAGATCGCCCGGGCAGATGGGCATCAAAACAGAAGCACCGGTTATCGATGCCGTGAAAAGGCGCACTCTGCCTGCATGGATTCGAGAAGGCCTCGAGAAAATGGACCgagagaagcagaagaagctGGAGAAGGAGAGGATGGAGAAAGAGCGTGCAGAAATGGCTCACGAGGAAAAAGACAACGATGCagcagaggaggagggagaCGGAGTTCGGCTGCCACGCAAGAGCAAGTTTGACAGTGATGATGAGGATGGCGATGAAGGTGAAGACGCAGAGGAAGGCGTTGTGGTGAAAATCCCATCTCCTGTACATGAGGAGCAGAGCGAACCGGAAATGACGGAAGAGGAGCGAGAGTTTCAGCTGATGCTGCTGACCAAAACGCTTCTGACCGAAGTTCTGCTCGAGGTGACGAATGAAGAAATCGTCCGCGTCGCCTTGGAGACGCATCGCAAAGCCAGCAAAGCTCCTGCAAAACAGCTGGCACAGTCCAGTGCACTGgcttctctctcctccctcgGCGGCCTTGGGGCATACGGATCAGACGAGAGTGAGGATGAGCGTAGCGTGAAGGGCTCGGACTCGTCTGATACGGATGAAGAGGAGCTGCGGCACCGGATTCGTCAGAAACAGGACGCGTTCCGGCGCAAGGAGCAGGAAAgacaggagctggaggagcaTGTTATTACTAACCCAGAACCCCCAGGCCTAGGGagcagagaaagggagagagagagtcatgaGGAAGAGCAGTCAGAttccaaacacaaacaggaagttaaGGATAGGGAGGTAGAGTCAGGCCAGAGGTCAGAGGTTAGTGAGGTCAAGCATTCAGGGTCACGCCGCAGCCGCACTTCCTCCTCCAGCtcgtcttcctcctcttctgtgtcatcatcttcctcctccacGTCCTCTTCCTCTTCGTCCCGTTCTTCCTCTCCGCGCAGGAAGAGGCGGCGCAGTCGCTCAGCTTCACGTGGGAATCGCAGGCGCAGTCGCAGCCGCAGTCGGAGTTCCCGCAGGAATCATTCAGAGCGCGGTGACAGGGAGAGGAGACGGAGCAGTCGAGACCGGAGCTCTGCTCGCTACAGGAAGCGCAGTCGCAGCCGTGATAGACGGCGCAGTCGCAGCCGCAGCCACAGTCGAAGGAAGAGAACGagaagcagagacagagagaggaggaaagagaggagCCCAAGCCgtgagaaggagaagaagaaaagagacaaGGAgctagagaaaaagaaagacaagcaAAAGgcaagagagaaggaaagggaaaaggaaaaggagagggaaagagagcgagaaagggaacgagaaagagagagggatgcTAGCTCAGccagagaggaggagagcagaTCGAAGAAGAAGCGGCGAGAGAGCGACACCATTTCCCGACAGGACAGCAGGTCTAGTAGAAAGAGTTTGACCAAATCAAACAGGAAGTACTCGGACTCTGACTCCAGCAGATCCCCGTCCCCCGAGGTTAGCAAAGgcaaaaagtctaaaaaaaacaaacgtaGTCGATCAAGGTCAACGGAAAAATCGCACAAGTCTGGTAAGAAGGCAAGCCGCAAACACAAGTCTAAATCGCGATCAAGGTCGAACTCCCCGAGCCGTCGCAGGCGCTGAGGATTCCTGCGCTTTCtcacttattttaaaattccATGAGTTTAAGGGGCGTGTCTCGTTATGGAGGCAGCGTTGTAGGTGAACTCTGCACTCAAACCCACACTGTAAATATGTGTTCATTTTTAAGCGATGTCTGTGATATGAAACGTTTTGAACAAAAAGGTTATTTTGGCCTTGTATTATGAAAGACTCAGCATTAGTAGTTGATATAGGATCTCGAAGCTGTAACATTTTAAAGCCCTCGAGACGAGGGAGAGAATTCATCTAATGTAAAGTGTCCAATAAAAtaagaatgcttttttttctgttca

Function

symbol description
pnisr Predicted to be active in nuclear speck and presynaptic active zone. Orthologous to human PNISR (PNN interacting serine and arginine rich protein).

NR:

description
arginine/serine-rich protein PNISR-like isoform X1

GO: NA

KEGG:

id description
K13170 PNISR, SFRS18; arginine/serine-rich protein PNISR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941174.2 False 2664 mRNA 0.54 12 4846889 4854797
XM_026941175.2 False 2610 mRNA 0.54 11 4846889 4854797
XM_034314781.1 True 2673 mRNA 0.53 12 4846889 4854683

Neighbor

gene id symbol gene type direction distance location
coq3 coq3 coding downstream 2745 4840757 ~ 4844144 (-)
faxcb faxc coding downstream 6943 4831177 ~ 4839946 (-)
mms22l mms22l coding downstream 108029 4716183 ~ 4738860 (-)
LOC113543015 LOC108280884 coding downstream 134701 4706554 ~ 4712188 (-)
LOC113543065 crgm2,LOC108280851,LOC108280850,LOC108259744,LOC108260578,LOC108260584,LOC108260581,LOC108259787,LOC108260664,LOC108260582 coding downstream 214273 4631747 ~ 4632616 (-)
LOC113543211 galr1 coding upstream 13739 4868536 ~ 4884081 (-)
LOC113543037 tshz1 coding upstream 164050 5018847 ~ 5028500 (-)
znf407 znf407,LOC104948785 coding upstream 188699 5043496 ~ 5056218 (-)
otol1b otol1,LOC107734882 coding upstream 218367 5073164 ~ 5079638 (-)
nmd3 nmd3 coding upstream 246793 5101590 ~ 5117234 (-)
G314692 NA non-coding downstream 46478 4798636 ~ 4800411 (-)
G314617 NA non-coding downstream 59467 4787207 ~ 4787422 (-)
G314616 NA non-coding downstream 63118 4783551 ~ 4783771 (-)
G314503 NA non-coding downstream 269557 4512018 ~ 4577332 (-)
G315019 NA non-coding upstream 277569 5132366 ~ 5211323 (-)
G315067 NA non-coding upstream 356876 5211673 ~ 5211906 (-)
G315021 NA non-coding upstream 357160 5211957 ~ 5216588 (-)
G315069 NA non-coding upstream 364752 5219549 ~ 5219829 (-)
G315075 NA non-coding upstream 372431 5227228 ~ 5227617 (-)
fbxl4 fbxl4 other downstream 29718 4800480 ~ 4817171 (-)
G313817 sall3,LOC108435487 other downstream 1531797 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 1958219 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 2134724 2669218 ~ 2712165 (-)
G313307 dsel,LOC108432253 other downstream 2522323 2319769 ~ 2324566 (-)
LOC113543250 znf236 other upstream 108268 4963065 ~ 4996005 (-)
trnat-agu_14 NA other upstream 365664 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 366146 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 366965 5221762 ~ 5221835 (-)
limk1a limk1,LOC107663742 other upstream 1738472 6593269 ~ 6649395 (-)

Expression


Co-expression Network