G315021


Basic Information

Item Value
gene id G315021
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5211957 ~ 5216588 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU373119
ggtttcaatatttatttcatcAAAGAAACTTAACCTGTAGTCATATGGTCAAGAGGTTAAGCATATCATCTAATTTCAATGTTTTCCCCACCTTTGAAACCACTTCTTTACTAATGCTGCACATATACCCTATGTCCAACAGAAGGTTGTGACCACAAAGAGTAATCCATCTCTACAGTGTTGTGAAAtttcaacacaaaaacaaaatatttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaagacctaatAGTATAATAGGAGTAAGGACAATATTGTGAACTCGAGAACACCACTGGTTTgttcatgcaattttttttttccttttacttgTGCTCTAGAAAGAAGGCACCGGACAACAGTCTGCGAGACACCAGAGACGTCAAGGAGCTGGAGCATCACGCTACGAAAATTATTTTCTCCCAAAAACAACACCCCAAAATAAGAGGCAGGtcatttatttcaaatcatTGAAACTATCATGAAGAATTACACCTCTACTGTGGCTTGACATTAATTAGGACTatctacatatacatataaaacaaacaaaaaaaaaaaatcaatattgtatttgtattatgCATATAGTTTGATGGGACAGGCATGTCAGTCCTAAATCTgcactcatcacacactgtcctcagtgtgtgtgcaaaacaGGTTAGACTGAATCAGATCAGGTGGGTACTGAGAGCTGAGTACGGGGATGGGGGGAGAGACGTAATATAAAAAGcagtttacaaaaataaaaagggaaaaaaaaggagaaagtaATTTGTTAACAGAAGTAAAAACCCATAAAACTATGCTGCATTTCAGTACATGTAAAGAATGAAATTTGTGTGACTTTACATAAAATGGCCTTATTTCTCCATTTATTACCAAAGAAGGTGTGAGGGCTCTACTGGGAACctacaaagaagaaaaataaaagaacaaatataCCATGCAGAAGAGTAATACAGAGCACTGAAAGGTAAGAATGGGTAATTGCAACTTTCTTTTCCAAAAAGGCAAAACTACAGTGGTACTTGTATTGAGGGATTGTAAGGGTTAACTGCAGTTCTACACAAGCACTGAAAATATATTCGgaagctaaaataaaatgtaaaacactgGAGACTAAAAGCAAATCCCAAAAGCTACAGAGTGCATCATTTTTAAACACGACGGCCCTCCATTTCTCCACTTAAGAGCCTAGTCCAGTGtcatttaagaaataaaagaaaaagaaaagaaacctgatgtctttttttttttttttttaattttaaatcattGCTGTTGCTTGACAATTTTTTATTCTtgacgtttttgttttttttccttttctgatcAGCCGCTTCTTCTTTgctgtttacttcttttttcctttatttgatTTTCCAGACTACTTTGTATTAACGCTCCTTTCAGTATTTCGATGGTGACTCTCCACATGCGTCCACATTCAGCCCTGCTTGACACACACTCCAGTCAGTCACACGcacactctctttctcgctctcacacatacacacgcactcGCACACACCCATTCGTCTGCTGACTTTGCACACGTAGCGCAGTCGAGGAATGACACGCGCTGAAAGTTAGAGATTTCGGAGGTAAGCTCCGCGTCCTCGGCCCCAGGTCCATACATTCATACGCAAAAACGGCTCACTCGCACACACCTCTCACAGCGGGGCCCATTGTGGGGAGGGGAGACGCCAACCGGTACGACACCTCCCGCTGCtcagttcatttttttgttgttttttttgtatattcttGTTCAGAggttttgtctgttttcttgTGTCATTCCCTCCAATTGCTAGGTTGCGACATCTTGTTTCTCCCCGTGGTTTTTTGCGCCGATTTGCTTTTGTTGTCGTTTGGTAGACACGTCCTGATATTTGTGTGACATTTCGCGAAATGTTCTCTGAACGCATTCGGTGTAGATGGTTGTGTTTTTGCAACATTTAGTAGCCCACTCATTCTCACTCGCACCCACTCGCCGTCACAAACTTCATTTGGACTGGATTCACGCCAGGATGCCAAACGAAATCCACACAATTTCTCTTGGATTAGATGCAGCCATGGATCCCATGAGCCAAGCACAATGGATCTAATTTCTCACATTCGCgcacttctctctttctctcctaattaattttttttttacatgttagAGCGCTGCATCGCAAACAAATCTCCAGATTTCATGTCGCCCTTCTAGAACTGGAATCCCTCTGCTGGCACATTGGCTGATGAATTAAATCCATATGTTCCACCTTGGATGGCCTCTGGAACCAGACTCGAGTCCTCATCAATCTGAGTGGAGACACGAATGACAACTCAATTACCCAACCCTTAGCTCCTTTAATGAGTGACATTCAAAGACTTATTTGAGGACAGATTAATCTCAGATCCCTTATAAGACAAGTCAAGGACATCATGAAATAATCGAGTCTGTGATTAATTTAGTAAATGGAAGCATGTTAAATTACTTGTAAAACCCCAGTATACATGTACTTAACACTGAATCGCACATGCATTATGAACTCTCGTGCCTTTCAGGTCACTAAAAGCAAAAGACTTACATCGTCAGACGAGAAGAACTGATCGATGATTTCGTAAGCCAGTTTGTAGATGTCCTCATTCTCATGATTCTGCAGCTGTTCAATTTTTTCCAATCCTAAGCAAAAGAGCAAGGATGGAGGATCAACAACATCTACTCAAAATGttacaaatactgtacattcttCAATCAAGGTTGAATCAGAAATCAAACAgaactttttaaaactatatGTAAATCACTCTGAAGTCAAAAAGCACAAGATCATTACCGAAGATCTACAAATATACATGTTGCTTATATCATGGCTCCAAATTCACAGCACCTGATTTAAGTATTGGCTTACAACTGTTTATTTAGGCGAACTCGCAGGTCAATAAACTGGCCTTTTTGTGCTCAGTAGCAAGTAAACGATTTACAGCGCTGTACCACAGCGAGAAATAAAATCAggtcattttacatttaagcTGTCAAACAAGATTTTTTGAATGGCAActgttttacacatttaagTTTCTGTGGTGTGACTACTTTCTGCCACTGGTTATTCAACAGGTAACACTGTTTCTACCATCACAAAACAGTCATATAAGGAATTAAATATGAAGGGgtatgttgttataggaaaataatcaacagcatgtttttgttaTGTGGCCTGATGCAAAGCTGTGTTACTggtaccaccctgaagttgattctttttctattacagcacatcctgaagtgttttatttcctcttataccatgggaattcatcattcatcattacagcttttaatttagtaaataacatactttttatctgtttagttacatttacagtccatgaaacaaattagttctcATTACCACCTATGTTATAatggctataaacagtcatctcCTCACAAGGatgtttttccccctctctctttaaGGAAATAACATAAAAGACATGGCCACGGTGGAAAACCTGCTAACGTCTACAAAGCACCAACACTGAAAATACCTTCCATAAGtgttcttacagaaagcttcaaatCATggatatgtttttctttgtgaaacagcatttttcaatctgcttattattaatcttatatTATATGGAGCgttcaccatacaagtccctgtctaAACTGTAACTACAGAAgcaataaagtattagaataaacacattataaatcTTGCAGCCGGaattacagtcagagctgctgttatagaaaattaattatcCTCATCTGATGAATCGGATTCGAGATTTCAGCCGTGACATACTGGGGACCAACTCACCTCCACACTCCTCAATCAGGTTGGCGATGGTCTCTGCCTCTTCATCAGCCATTTTGAGAATATTGCTCAGTCCATCCAGAACCACCTGCACCACCTGAGCATCCTTGACTGTCAGCAGGTTGCAGAAGGGTGGAATAACCTGCTGCTGGATCAGGTACGCAACCTAGAGAACAAGATTGACACTCTATCACTGGAGCTACTTCACTATTCTTCTTCACAGTACCaacataaaacatacacaacatggccaaaagtttggggacacctgaccatcacacccatatgtgcatgctgaacatcacattccagatttTATCCCTCCACTCTTCTccaggctttccactacattttggaatgtgtctgtggggatttgtgctcatttagcCGCAAGAGCTTtaatcaggcactgatgttgggcgaggagtgCAGGCGGCATTCCAgatcatcccaaaggtgctcagtggggttgaggtcagggctctgtgcagctcactcgagttcttccacttcaacttcggcaaaccatgtgttcatggagctcattttgtgtacaggggcactgtcatgctggaacaggtttgagccccttagttccagtgaagcgaGATACTACAGCATAAAAAGACTTCCTATACAATTGcatgcttccaacattgtggcaacagtttggggatgaaccacatgtgatggtcaggtgtccatgtacttttggccatataatgtatgtcTAGCATAAATAATTGGTAGGGGTTTACCTGGTCTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU373119 True 4632 lncRNA 0.39 1 5211957 5216588

Neighbor

gene id symbol gene type direction distance location
nmd3 nmd3 coding downstream 94723 5101590 ~ 5117234 (-)
otol1b otol1,LOC107734882 coding downstream 132319 5073164 ~ 5079638 (-)
znf407 znf407,LOC104948785 coding downstream 155739 5043496 ~ 5056218 (-)
LOC113543037 tshz1 coding downstream 183457 5018847 ~ 5028500 (-)
LOC113543211 galr1 coding downstream 327876 4868536 ~ 4884081 (-)
smc4 smc4,LOC107720450 coding upstream 11558 5228146 ~ 5249124 (-)
LOC113543027 NA coding upstream 109928 5326516 ~ 5329612 (-)
il12a NA coding upstream 154480 5371068 ~ 5376970 (-)
schip1 schip1,LOC103369651,LOC106580942,LOC104954265,LOC102193686,LOC106612913,LOC100701131,LOC107081925,LOC103148079,LOC108240933,LOC101468843,LOC107750091,LOC108424074,LOC107551285,LOC108280660 coding upstream 167969 5384557 ~ 5690974 (-)
mfsd1 mfsd1,LOC106580941 coding upstream 477076 5693664 ~ 5709552 (-)
G315067 NA non-coding downstream 51 5211673 ~ 5211906 (-)
G315019 NA non-coding downstream 634 5132366 ~ 5211323 (-)
G314692 NA non-coding downstream 411546 4798636 ~ 4800411 (-)
G314617 NA non-coding downstream 424535 4787207 ~ 4787422 (-)
G314616 NA non-coding downstream 428186 4783551 ~ 4783771 (-)
G315069 NA non-coding upstream 2961 5219549 ~ 5219829 (-)
G315075 NA non-coding upstream 10640 5227228 ~ 5227617 (-)
G315141 NA non-coding upstream 115306 5331894 ~ 5332153 (-)
G315142 NA non-coding upstream 117081 5333669 ~ 5333879 (-)
G315172 NA non-coding upstream 232336 5448924 ~ 5449129 (-)
LOC113543250 znf236 other downstream 215952 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 394786 4800480 ~ 4817171 (-)
G313817 sall3,LOC108435487 other downstream 1896865 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 2323287 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 2499792 2669218 ~ 2712165 (-)
trnat-agu_14 NA other upstream 3873 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 4355 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 5174 5221762 ~ 5221835 (-)
limk1a limk1,LOC107663742 other upstream 1376681 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 2348493 7565081 ~ 7568134 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2056770 NA non-coding NC_048591.1 CM023245.2 16289436 ~ 16291595 (+)
bowfin (Amia calva) AMCG00009314 kpna4,LOC107750083 coding CM030126.1 CM030126.1 32928268 ~ 32939975 (-)
mexican tetra (Astyanax mexicanus) G149934 NA non-coding NC_035913.1 CM008316.1 6741526 ~ 6745025 (+)