RNA id: TU373119


Basic Information

Item Value
RNA id TU373119
length 4632
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G315021
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5211957 ~ 5216588 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggtttcaatatttatttcatcAAAGAAACTTAACCTGTAGTCATATGGTCAAGAGGTTAAGCATATCATCTAATTTCAATGTTTTCCCCACCTTTGAAACCACTTCTTTACTAATGCTGCACATATACCCTATGTCCAACAGAAGGTTGTGACCACAAAGAGTAATCCATCTCTACAGTGTTGTGAAAtttcaacacaaaaacaaaatatttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaagacctaatAGTATAATAGGAGTAAGGACAATATTGTGAACTCGAGAACACCACTGGTTTgttcatgcaattttttttttccttttacttgTGCTCTAGAAAGAAGGCACCGGACAACAGTCTGCGAGACACCAGAGACGTCAAGGAGCTGGAGCATCACGCTACGAAAATTATTTTCTCCCAAAAACAACACCCCAAAATAAGAGGCAGGtcatttatttcaaatcatTGAAACTATCATGAAGAATTACACCTCTACTGTGGCTTGACATTAATTAGGACTatctacatatacatataaaacaaacaaaaaaaaaaaatcaatattgtatttgtattatgCATATAGTTTGATGGGACAGGCATGTCAGTCCTAAATCTgcactcatcacacactgtcctcagtgtgtgtgcaaaacaGGTTAGACTGAATCAGATCAGGTGGGTACTGAGAGCTGAGTACGGGGATGGGGGGAGAGACGTAATATAAAAAGcagtttacaaaaataaaaagggaaaaaaaaggagaaagtaATTTGTTAACAGAAGTAAAAACCCATAAAACTATGCTGCATTTCAGTACATGTAAAGAATGAAATTTGTGTGACTTTACATAAAATGGCCTTATTTCTCCATTTATTACCAAAGAAGGTGTGAGGGCTCTACTGGGAACctacaaagaagaaaaataaaagaacaaatataCCATGCAGAAGAGTAATACAGAGCACTGAAAGGTAAGAATGGGTAATTGCAACTTTCTTTTCCAAAAAGGCAAAACTACAGTGGTACTTGTATTGAGGGATTGTAAGGGTTAACTGCAGTTCTACACAAGCACTGAAAATATATTCGgaagctaaaataaaatgtaaaacactgGAGACTAAAAGCAAATCCCAAAAGCTACAGAGTGCATCATTTTTAAACACGACGGCCCTCCATTTCTCCACTTAAGAGCCTAGTCCAGTGtcatttaagaaataaaagaaaaagaaaagaaacctgatgtctttttttttttttttttaattttaaatcattGCTGTTGCTTGACAATTTTTTATTCTtgacgtttttgttttttttccttttctgatcAGCCGCTTCTTCTTTgctgtttacttcttttttcctttatttgatTTTCCAGACTACTTTGTATTAACGCTCCTTTCAGTATTTCGATGGTGACTCTCCACATGCGTCCACATTCAGCCCTGCTTGACACACACTCCAGTCAGTCACACGcacactctctttctcgctctcacacatacacacgcactcGCACACACCCATTCGTCTGCTGACTTTGCACACGTAGCGCAGTCGAGGAATGACACGCGCTGAAAGTTAGAGATTTCGGAGGTAAGCTCCGCGTCCTCGGCCCCAGGTCCATACATTCATACGCAAAAACGGCTCACTCGCACACACCTCTCACAGCGGGGCCCATTGTGGGGAGGGGAGACGCCAACCGGTACGACACCTCCCGCTGCtcagttcatttttttgttgttttttttgtatattcttGTTCAGAggttttgtctgttttcttgTGTCATTCCCTCCAATTGCTAGGTTGCGACATCTTGTTTCTCCCCGTGGTTTTTTGCGCCGATTTGCTTTTGTTGTCGTTTGGTAGACACGTCCTGATATTTGTGTGACATTTCGCGAAATGTTCTCTGAACGCATTCGGTGTAGATGGTTGTGTTTTTGCAACATTTAGTAGCCCACTCATTCTCACTCGCACCCACTCGCCGTCACAAACTTCATTTGGACTGGATTCACGCCAGGATGCCAAACGAAATCCACACAATTTCTCTTGGATTAGATGCAGCCATGGATCCCATGAGCCAAGCACAATGGATCTAATTTCTCACATTCGCgcacttctctctttctctcctaattaattttttttttacatgttagAGCGCTGCATCGCAAACAAATCTCCAGATTTCATGTCGCCCTTCTAGAACTGGAATCCCTCTGCTGGCACATTGGCTGATGAATTAAATCCATATGTTCCACCTTGGATGGCCTCTGGAACCAGACTCGAGTCCTCATCAATCTGAGTGGAGACACGAATGACAACTCAATTACCCAACCCTTAGCTCCTTTAATGAGTGACATTCAAAGACTTATTTGAGGACAGATTAATCTCAGATCCCTTATAAGACAAGTCAAGGACATCATGAAATAATCGAGTCTGTGATTAATTTAGTAAATGGAAGCATGTTAAATTACTTGTAAAACCCCAGTATACATGTACTTAACACTGAATCGCACATGCATTATGAACTCTCGTGCCTTTCAGGTCACTAAAAGCAAAAGACTTACATCGTCAGACGAGAAGAACTGATCGATGATTTCGTAAGCCAGTTTGTAGATGTCCTCATTCTCATGATTCTGCAGCTGTTCAATTTTTTCCAATCCTAAGCAAAAGAGCAAGGATGGAGGATCAACAACATCTACTCAAAATGttacaaatactgtacattcttCAATCAAGGTTGAATCAGAAATCAAACAgaactttttaaaactatatGTAAATCACTCTGAAGTCAAAAAGCACAAGATCATTACCGAAGATCTACAAATATACATGTTGCTTATATCATGGCTCCAAATTCACAGCACCTGATTTAAGTATTGGCTTACAACTGTTTATTTAGGCGAACTCGCAGGTCAATAAACTGGCCTTTTTGTGCTCAGTAGCAAGTAAACGATTTACAGCGCTGTACCACAGCGAGAAATAAAATCAggtcattttacatttaagcTGTCAAACAAGATTTTTTGAATGGCAActgttttacacatttaagTTTCTGTGGTGTGACTACTTTCTGCCACTGGTTATTCAACAGGTAACACTGTTTCTACCATCACAAAACAGTCATATAAGGAATTAAATATGAAGGGgtatgttgttataggaaaataatcaacagcatgtttttgttaTGTGGCCTGATGCAAAGCTGTGTTACTggtaccaccctgaagttgattctttttctattacagcacatcctgaagtgttttatttcctcttataccatgggaattcatcattcatcattacagcttttaatttagtaaataacatactttttatctgtttagttacatttacagtccatgaaacaaattagttctcATTACCACCTATGTTATAatggctataaacagtcatctcCTCACAAGGatgtttttccccctctctctttaaGGAAATAACATAAAAGACATGGCCACGGTGGAAAACCTGCTAACGTCTACAAAGCACCAACACTGAAAATACCTTCCATAAGtgttcttacagaaagcttcaaatCATggatatgtttttctttgtgaaacagcatttttcaatctgcttattattaatcttatatTATATGGAGCgttcaccatacaagtccctgtctaAACTGTAACTACAGAAgcaataaagtattagaataaacacattataaatcTTGCAGCCGGaattacagtcagagctgctgttatagaaaattaattatcCTCATCTGATGAATCGGATTCGAGATTTCAGCCGTGACATACTGGGGACCAACTCACCTCCACACTCCTCAATCAGGTTGGCGATGGTCTCTGCCTCTTCATCAGCCATTTTGAGAATATTGCTCAGTCCATCCAGAACCACCTGCACCACCTGAGCATCCTTGACTGTCAGCAGGTTGCAGAAGGGTGGAATAACCTGCTGCTGGATCAGGTACGCAACCTAGAGAACAAGATTGACACTCTATCACTGGAGCTACTTCACTATTCTTCTTCACAGTACCaacataaaacatacacaacatggccaaaagtttggggacacctgaccatcacacccatatgtgcatgctgaacatcacattccagatttTATCCCTCCACTCTTCTccaggctttccactacattttggaatgtgtctgtggggatttgtgctcatttagcCGCAAGAGCTTtaatcaggcactgatgttgggcgaggagtgCAGGCGGCATTCCAgatcatcccaaaggtgctcagtggggttgaggtcagggctctgtgcagctcactcgagttcttccacttcaacttcggcaaaccatgtgttcatggagctcattttgtgtacaggggcactgtcatgctggaacaggtttgagccccttagttccagtgaagcgaGATACTACAGCATAAAAAGACTTCCTATACAATTGcatgcttccaacattgtggcaacagtttggggatgaaccacatgtgatggtcaggtgtccatgtacttttggccatataatgtatgtcTAGCATAAATAATTGGTAGGGGTTTACCTGGTCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373170 lncRNA downstream 51 5211673 ~ 5211906 (-) True G315067
TU373112 lncRNA downstream 634 5137824 ~ 5211323 (-) False G315019
TU373172 lncRNA upstream 2961 5219549 ~ 5219829 (-) True G315069
TU373188 lncRNA upstream 10640 5227228 ~ 5227617 (-) True G315075
TU373255 lncRNA upstream 115306 5331894 ~ 5332153 (-) True G315141
TU373256 lncRNA upstream 117081 5333669 ~ 5333879 (-) True G315142
TU373289 lncRNA upstream 232336 5448924 ~ 5449129 (-) True G315172
XM_034297727.1 mRNA downstream 94723 5101590 ~ 5117234 (-) False nmd3
XM_034297726.1 mRNA downstream 94723 5101590 ~ 5117234 (-) True nmd3
XM_026941159.2 mRNA downstream 132319 5073164 ~ 5079638 (-) True otol1b
XM_026941332.2 mRNA downstream 155739 5043496 ~ 5056218 (-) True znf407
XM_026940969.2 mRNA downstream 183457 5018847 ~ 5028500 (-) True LOC113543037
XM_034297748.1 mRNA upstream 11558 5228146 ~ 5249124 (-) True smc4
XM_026940952.2 mRNA upstream 109928 5326516 ~ 5329612 (-) True LOC113543027
XM_026941014.2 mRNA upstream 154480 5371068 ~ 5376970 (-) True il12a
XM_026941093.2 mRNA upstream 167969 5384557 ~ 5690974 (-) True schip1
XM_026941094.2 mRNA upstream 167969 5384557 ~ 5447173 (-) False schip1
trnas-aga_15 other downstream 1585510 3626366 ~ 3626447 (-) True trnas-aga_15
TU371730 other downstream 1896865 3313304 ~ 3315092 (-) True G313817
TU371136 other downstream 2887391 2319769 ~ 2324566 (-) True G313307
XR_004576907.1 other downstream 4160359 1005256 ~ 1051598 (-) False rbm33b
trnat-agu_14 other upstream 3873 5220461 ~ 5220534 (-) True trnat-agu_14
trnat-agu_15 other upstream 4355 5220943 ~ 5221016 (-) True trnat-agu_15
trnat-agu_16 other upstream 5174 5221762 ~ 5221835 (-) True trnat-agu_16
XR_003404409.1 other upstream 1111080 6327668 ~ 6327776 (-) True LOC113543401
XR_003404412.1 other upstream 1253747 6470335 ~ 6470426 (-) True LOC113543404

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2352256 True 1392 lncRNA 0.44 2 NC_048591.1 16289436 ~ 16291595 (+)
striped catfish (Pangasianodon hypophthalmus) TU203072 False 371 TUCP 0.47 1 NC_047604.1 25258839 ~ 25259209 (-)
bowfin (Amia calva) AMCG00009314 True 3558 mRNA 0.41 17 CM030126.1 32928268 ~ 32939975 (-)
mexican tetra (Astyanax mexicanus) TU203072 True 2978 lncRNA 0.40 2 NC_035913.1 6741526 ~ 6745025 (+)