RNA id: XM_034297748.1


Basic Information

Item Value
RNA id XM_034297748.1
length 4299
RNA type mRNA
GC content 0.48
exon number 24
gene id smc4
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5228146 ~ 5249124 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTTGCGGCAGATTGTAACGAATTTAGGCGCCATTTTCAAGTTGGGTTTTTTCCCCTGAGCAGAGTCGGGGAAACTAAGACGGCAGGATTTtcgctttatttttttaaaattttttttattttttaaattaagctgcacaattttcatttttgtggaTTATCACAGGGAATCCTCACCACAGAAGTCCAAACTATTCGACGGAAAATTAAAGATTTGTAGCATGCCCTCGAAAACGACTAAAAGCTCCTCGGCTGCGAAGCCCCGGGGGAAAGGGTCGCAGGATGACGGTGATGATGAGATGAAGGAAATAAAGCCTCATGGAGAAGTGCACGCAGATGATCAGGACGCACCGCAGACTAATGATGCCGCTGGTGAGGCGGTGGATAACCGGAGCCTGGAGGAGATTCTCGGTAGCATccctccacccccaccccccgCGATGACCAACGAACCGGGCGCTCCCCGCCTCATGATCACGCACATCGTCAATCGGAACTTCAAATCATACGCCGGGGAGCAGATCCTAGGGCCTTTCCATAAGCGCTTTTCCTGTATCATCGGTCCAAACGGCAGCGGGAAATCCAACGTGATCGACTCGATGCTCTTCGTATTTGGATACAGAGCGCAAAAAATCAGGTCCAAAAAGCTGTCTGTGCTTATTCACAGTTCTGACGGGCACAAGGACATCCAGAGCTGCACTGTAGAGGTGCACTTTCAGAAGATTATCGACaagGAAGGAGATGACTACGATGTCATCCCTGACAGCAAGTTTTACGTTTCAAGAACTGCCGGTAAAGATAATTCCTCATCCTACCACATCAATGGCAAAAAGGCAACCTTCAAAGATGTTGGAATTTTGCTCCGTAGCCATGGCATTGACCTTGACCACAACCGATTTCTCATTCTACAGGGAGAAGTGGAGCAGATTGCGATGATGAAGCCCAAAGGCCAGACGGAGCATGATGAAGGCATGCTGGAATACCTGGAGGACATCATTGGCTCCTGCCGACTCAAAGAGCCCATCAACACGCTGTGCAGACGAGTGGAGCTACTAAATGAGCAGAGAGGGGAAAAGCTGAATCGTGTGAAGTtggtggagaaggagaagaatgCCCTGGAGGGTGAAAAGAATAAAGCAGTGGAATTTCTCACCCTAGAGAATGACATGTTTAAGAAGAGAAGCCAACTCTGCCAGTTCTATGTACATGATTTGCAGCAGCGTGTGGCTGAAAAGGAAGCAGAAAAACAAGAGATCCAGGAGGACACCAAGGGACTGACTGAAAAAAGCAACCAGCTCACAGAGGAAATGAAGGGGAAGAATGAAGCCCTGAAGAATGTGGAGAAGAAAGTGGGCAAGCTGACCAAGTTCATTGAGAGCCAGAAGGAGAAGTTCACCCAGTTGGACCTCCAGGACGTGGAGGTGCGGGAGAAGCTCAAGCACACCAAGAACAAGGCCAAGAAACTCCACAAACAGCTGCAGAAGGACAAGGAAaagttggAGGAAGTGAAAAACGTTCCAGCCAGCAGTGAAAAGATCATCACAGAGGCTTCTGCCCAGAAAGAAATGTTGGAGAAAGAGAAGGTTAAGGAGGAAGCAGCTCTGGCCCAGGTGATGGAGCGCCTGAAGGAGGAGACCAGTGGCTTGCAGCAGGAAAAGGAGCAAAAAGAGAAGGAGCTTCTGGAGCTAAGTAAAGCTGTGAATGAGACCCGCTCGCAGATGGACGTAGCTCAGTCAGAGCTGGACATCTACCTGAGTCAGCACAACACAGCCGTTTCACAGCTCAACCAGGCTAAGGAGGCCCTACAGGGAACTGCTGACACACTCAAAGACAGAAGAGCTGCCATCAAAGAGCTGAAGGTCAAAGTTCCCAAGTGTGAGCAGGAGCTTAAAAAGgatgaAGAGGAGCTGAAGCAGATTTCTGAGCAGGATGGAGAGGCCCAGGCTATGGTCAGGGACATAAGGCAGAAGGTTGAAGAGGCCAAGTCCTCTCTGTCCACCACCCGCAGCCGAGGCAAAGTGCTTGACGCACTCATGCAGCAGAAACGCAGTGGCAAGATCCCTGGCATCCTGGGACGTCTGGGTGATCTGGGAGCTATTGAGGAGAAATATGACATTGCTATCTCATCAAGTTGTGGCGCACTCGATAACATTGTGGTGAACACCATTGACACAGCTCAGAAATGTGTCACCTTCCTTAAGGCCCAGAATATTGGAGTGGCGACCTTCATTGGTCTAGATAAGATGAAGGTCTGGGAGAAAAACATGAGAGCCATCTCCACACCAGAGAACATTCCCCGTTTGTTTGATATGGTCAAAGTAAAGGATGATTCCGTCCGTCCCGCCTTCTACTTCGCCCTGAGAGATACCCTGGTGGCTAAAGACCTGGAGCAGGCGACTAGAGTGGCCTTCCAGAAAGACAAACGCtggagagtggtcactctgcAGGGACAGATCATCGAACaggctgGCACTATGACGGGAGGAGGAGGGCGTGTAATGAAAGGGAGAATGGGCTCTTCTATTGGCACTGAAGTCACACAGGAACAGctgGACAAAATGGAGAGTGCATTAAAGGAGAAGGTGGCGCAGCTGCAGGGCTGGCAGCAAAGGAAACAGCAGCTTGAGGAGAGTGTGCACAAACAGAGACAGGAGCTCAGAGACATGAAGAACACGTTGGAGAAATACACAGCCAGCATTCAGAGTCTTGAGGAGCAAGAGATTCACCTGAAGTCTCAGATAAAGGAGCTGGAAGCAAATGTTATTGCTGCTGCCCCAGACAAAGCCAAGCAAAAACAGATGGAGAAAAACCTGGAAGCCTTCAAGAAAAATTATGAGGCTGCATCCAGTAAGGCAGGAAAGGTTGAAGCTGAGGTGAAACGACTCCACAACCTAATTGTGGACATCAACAGCCATAAGTTGAAGGCCCAACAGGATAAACTGGATAAGATCAACAAAGAGCTTGATGAGTGTTCATCAGCAATCACCAAAGCCCAAGTGGCTATCAAGACGGCAGGACGTAATCTGAAAAAGGCAGAGGAGACGGTTACGCGACTGGAAACTGAGATTGCAGAGAATGAGAAATTAATGGAGGAGCTCACAGAGCAGCTGAAGAAACTGGAGGATCAAGCAGGAGAGATCATGAAGTCCTGCCAGGAGGCTGAGGAGGCGATGCCTGAGGTGCAGGAACAGCATCGGGGGGTCTTGCAGGAGATCAAGGCTCTTCAGGAACAAGAGCACGCTCTGCAGAAAGAGTCGCTGAATGTTCGGCTGAAAGTGGAGCAAATCGACACAGCCATCGCTGAGTGTCAGAATAAGATCAAACACTGGGAAAAAGAGTCCACAAAGCTTGCTCTGCACTCGATTGATGATAAACCAGCAGAGGAACTGCCTAAGCTGACCACAGAGCAGTTGGAGGCCATTAAAAGCCCAGATGTCATCAAAAACGAGATTGCTCTTTTGGAGGATCGCTGTGCCCAGATGAAGCCCAACCTGGGAGCTATAGCAGAGTTTAAGAAGAAGgAGGAGCTTTATTTGCAGAGAGTAGCTGAGCTGGATGAGATTACCACCCAGAGAGACAACTTCAAGAGGAGCTGCGAGGACCTGCGGAAACAGAGACTGAACGAGTTCATGGCTGGCTTTAACATCATTACCAACAAGCTGAAGGAGAACTACCAGATGCTGACACTGGGGGGTGATGCTGAGCTGGAGCTTGTGGACAGCTTGGACCCTTTCTCTGAGGGCATCATGTTTAGTGTGCGTCCTCCTAAGAAGAGCTGGAAGAAAATCTATAACTTGTCTGGAGGAGAGAAGACTCTGAGCTCTTTGGCTTTGGTCTTCGCGCTGCACCACTTCAAGCCCACACCTCTGTACTTCATGGACGAGATAGACGCTGCTCTGGATTTCAAGAATGTGTCCATTGTGGCCTGTTACATATATGAACAAACCAAGAATGCGCAGTTCATAATCATCTCTCTGAGGAACAACATGTTTGAGATGGCTGACCGCCTGATTGGCatctacaaaacacacaacaccactAAAAACGTGGGAATCAACCCCAAAACCATTGTCCTCAAAGACATTGAAGTTGCATCAGgataaaacaacaaatataTCCTTGGACTTCTGTTGTCTTTGTCTGTGTTGATCGCTCTTAAATCTTTTTCTCTTGCACCTGTTTCCACATGAtcacatctatttttttttttttttttttttctcctgtgcaGGTTAAAGCAATTTAACCTTACTACAAATGCTGCTGTTTATACTATTAAActttatataaaacatgaa

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0051276 chromosome organization biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K06675 SMC4; structural maintenance of chromosome 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373188 lncRNA downstream 529 5227228 ~ 5227617 (-) True G315075
TU373172 lncRNA downstream 8317 5219549 ~ 5219829 (-) True G315069
TU373119 lncRNA downstream 11558 5211957 ~ 5216588 (-) True G315021
TU373170 lncRNA downstream 16240 5211673 ~ 5211906 (-) True G315067
TU373115 lncRNA downstream 16823 5132366 ~ 5211323 (-) False G315019
TU373255 lncRNA upstream 82770 5331894 ~ 5332153 (-) True G315141
TU373256 lncRNA upstream 84545 5333669 ~ 5333879 (-) True G315142
TU373289 lncRNA upstream 199800 5448924 ~ 5449129 (-) True G315172
TU373292 lncRNA upstream 212263 5461387 ~ 5461591 (-) True G315175
TU373331 lncRNA upstream 315439 5564563 ~ 5564775 (-) True G315213
XM_034297727.1 mRNA downstream 110912 5101590 ~ 5117234 (-) False nmd3
XM_034297726.1 mRNA downstream 110912 5101590 ~ 5117234 (-) True nmd3
XM_026941159.2 mRNA downstream 148508 5073164 ~ 5079638 (-) True otol1b
XM_026941332.2 mRNA downstream 171928 5043496 ~ 5056218 (-) True znf407
XM_026940969.2 mRNA downstream 199646 5018847 ~ 5028500 (-) True LOC113543037
XM_026940952.2 mRNA upstream 77392 5326516 ~ 5329612 (-) True LOC113543027
XM_026941014.2 mRNA upstream 121944 5371068 ~ 5376970 (-) True il12a
XM_026941093.2 mRNA upstream 135433 5384557 ~ 5690974 (-) True schip1
XM_026941094.2 mRNA upstream 135433 5384557 ~ 5447173 (-) False schip1
XM_026941096.2 mRNA upstream 135433 5384557 ~ 5428370 (-) False schip1
trnat-agu_16 other downstream 6311 5221762 ~ 5221835 (-) True trnat-agu_16
trnat-agu_15 other downstream 7130 5220943 ~ 5221016 (-) True trnat-agu_15
trnat-agu_14 other downstream 7612 5220461 ~ 5220534 (-) True trnat-agu_14
trnas-aga_15 other downstream 1601699 3626366 ~ 3626447 (-) True trnas-aga_15
TU371730 other downstream 1913054 3313304 ~ 3315092 (-) True G313817
XR_003404409.1 other upstream 1078544 6327668 ~ 6327776 (-) True LOC113543401
XR_003404412.1 other upstream 1221211 6470335 ~ 6470426 (-) True LOC113543404
XR_004576924.1 other upstream 2592778 7841902 ~ 7842020 (-) True LOC117595747
XR_004576920.1 other upstream 2594866 7843990 ~ 7844108 (-) True LOC117595743
XR_004576926.1 other upstream 2596928 7846052 ~ 7846170 (-) True LOC117595749

Expression Profile