Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU373170 |
| length | 234 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G315067 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 5211673 ~ 5211906 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU373115 | lncRNA | downstream | 350 | 5132366 ~ 5211323 (-) | False | G315019 |
| TU373109 | lncRNA | downstream | 350 | 5137824 ~ 5211323 (-) | False | G315019 |
| TU373112 | lncRNA | downstream | 350 | 5137824 ~ 5211323 (-) | False | G315019 |
| TU373117 | lncRNA | downstream | 350 | 5137824 ~ 5211323 (-) | True | G315019 |
| TU373111 | lncRNA | downstream | 350 | 5153307 ~ 5211323 (-) | False | G315019 |
| TU373119 | lncRNA | upstream | 51 | 5211957 ~ 5216588 (-) | True | G315021 |
| TU373172 | lncRNA | upstream | 7643 | 5219549 ~ 5219829 (-) | True | G315069 |
| TU373188 | lncRNA | upstream | 15322 | 5227228 ~ 5227617 (-) | True | G315075 |
| TU373255 | lncRNA | upstream | 119988 | 5331894 ~ 5332153 (-) | True | G315141 |
| TU373256 | lncRNA | upstream | 121763 | 5333669 ~ 5333879 (-) | True | G315142 |
| XM_034297727.1 | mRNA | downstream | 94439 | 5101590 ~ 5117234 (-) | False | nmd3 |
| XM_034297726.1 | mRNA | downstream | 94439 | 5101590 ~ 5117234 (-) | True | nmd3 |
| XM_026941159.2 | mRNA | downstream | 132035 | 5073164 ~ 5079638 (-) | True | otol1b |
| XM_026941332.2 | mRNA | downstream | 155455 | 5043496 ~ 5056218 (-) | True | znf407 |
| XM_026940969.2 | mRNA | downstream | 183173 | 5018847 ~ 5028500 (-) | True | LOC113543037 |
| XM_034297748.1 | mRNA | upstream | 16240 | 5228146 ~ 5249124 (-) | True | smc4 |
| XM_026940952.2 | mRNA | upstream | 114610 | 5326516 ~ 5329612 (-) | True | LOC113543027 |
| XM_026941014.2 | mRNA | upstream | 159162 | 5371068 ~ 5376970 (-) | True | il12a |
| XM_026941093.2 | mRNA | upstream | 172651 | 5384557 ~ 5690974 (-) | True | schip1 |
| XM_026941094.2 | mRNA | upstream | 172651 | 5384557 ~ 5447173 (-) | False | schip1 |
| trnas-aga_15 | other | downstream | 1585226 | 3626366 ~ 3626447 (-) | True | trnas-aga_15 |
| TU371730 | other | downstream | 1896581 | 3313304 ~ 3315092 (-) | True | G313817 |
| TU371136 | other | downstream | 2887107 | 2319769 ~ 2324566 (-) | True | G313307 |
| XR_004576907.1 | other | downstream | 4160075 | 1005256 ~ 1051598 (-) | False | rbm33b |
| trnat-agu_14 | other | upstream | 8555 | 5220461 ~ 5220534 (-) | True | trnat-agu_14 |
| trnat-agu_15 | other | upstream | 9037 | 5220943 ~ 5221016 (-) | True | trnat-agu_15 |
| trnat-agu_16 | other | upstream | 9856 | 5221762 ~ 5221835 (-) | True | trnat-agu_16 |
| XR_003404409.1 | other | upstream | 1115762 | 6327668 ~ 6327776 (-) | True | LOC113543401 |
| XR_003404412.1 | other | upstream | 1258429 | 6470335 ~ 6470426 (-) | True | LOC113543404 |
