RNA id: TU373117


Basic Information

Item Value
RNA id TU373117
length 448
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G315019
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5132366 ~ 5211323 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATAGTGTTGGATCAGACTGCAGGAAGCTGTGGGAGGAGCCACAGCCCCTGAGCAAGACAGCGGCACTGCGAGAGCTGTGGATGGGAGCGGTTTTGAGGCTTTAATCATCGGCCCAGTCACAGAAAAGCCTCTGTTTGAGTGATGAGCCTCAGATGCACTCCTTTATCTGCAATGACTCTGTGGTCTTGAGCACTCCCAGTCCATCAGCTGAAtaatccatacacacacacacacgcgcaccaTTAAAAACCCCCTTTAAACACTTCCTAAAATGTCCTGTTGTGAACCATAAAACTAAACCTAATCATGGTCTAGATCTATATCTAAGCTTTGTTCCTTGGCAGATCTTCATCCAGGGTGTCACCTACTTCTGTGGTCTGTACTAAATCTAAGCAAATTCAAAATCCAtgcacacacacacacacacacacacacacacacacacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372807 lncRNA downstream 171829 4963361 ~ 4965995 (-) False LOC113543250
TU372747 lncRNA downstream 336588 4800649 ~ 4801236 (-) False fbxl4
TU372748 lncRNA downstream 337413 4798636 ~ 4800411 (-) True G314692
TU372662 lncRNA downstream 350402 4787207 ~ 4787422 (-) True G314617
TU372661 lncRNA downstream 354053 4783551 ~ 4783771 (-) True G314616
TU373170 lncRNA upstream 350 5211673 ~ 5211906 (-) True G315067
TU373119 lncRNA upstream 634 5211957 ~ 5216588 (-) True G315021
TU373172 lncRNA upstream 8226 5219549 ~ 5219829 (-) True G315069
TU373188 lncRNA upstream 15905 5227228 ~ 5227617 (-) True G315075
TU373255 lncRNA upstream 120571 5331894 ~ 5332153 (-) True G315141
XM_034297727.1 mRNA downstream 20590 5101590 ~ 5117234 (-) False nmd3
XM_034297726.1 mRNA downstream 20590 5101590 ~ 5117234 (-) True nmd3
XM_026941159.2 mRNA downstream 58186 5073164 ~ 5079638 (-) True otol1b
XM_026941332.2 mRNA downstream 81606 5043496 ~ 5056218 (-) True znf407
XM_026940969.2 mRNA downstream 109324 5018847 ~ 5028500 (-) True LOC113543037
XM_034297748.1 mRNA upstream 16823 5228146 ~ 5249124 (-) True smc4
XM_026940952.2 mRNA upstream 115193 5326516 ~ 5329612 (-) True LOC113543027
XM_026941014.2 mRNA upstream 159745 5371068 ~ 5376970 (-) True il12a
XM_026941093.2 mRNA upstream 173234 5384557 ~ 5690974 (-) True schip1
XM_026941094.2 mRNA upstream 173234 5384557 ~ 5447173 (-) False schip1
trnas-aga_15 other downstream 1511377 3626366 ~ 3626447 (-) True trnas-aga_15
TU371730 other downstream 1822732 3313304 ~ 3315092 (-) True G313817
TU371136 other downstream 2813258 2319769 ~ 2324566 (-) True G313307
XR_004576907.1 other downstream 4086226 1005256 ~ 1051598 (-) False rbm33b
trnat-agu_14 other upstream 9138 5220461 ~ 5220534 (-) True trnat-agu_14
trnat-agu_15 other upstream 9620 5220943 ~ 5221016 (-) True trnat-agu_15
trnat-agu_16 other upstream 10439 5221762 ~ 5221835 (-) True trnat-agu_16
XR_003404409.1 other upstream 1116345 6327668 ~ 6327776 (-) True LOC113543401
XR_003404412.1 other upstream 1259012 6470335 ~ 6470426 (-) True LOC113543404

Expression Profile