Gene
RNA
| Item | Value |
|---|---|
| gene id | G315141 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 5331894 ~ 5332153 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU373255 | True | 260 | lncRNA | 0.40 | 1 | 5331894 | 5332153 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113543027 | NA | coding | downstream | 2282 | 5326516 ~ 5329612 (-) |
| smc4 | smc4,LOC107720450 | coding | downstream | 82770 | 5228146 ~ 5249124 (-) |
| nmd3 | nmd3 | coding | downstream | 214660 | 5101590 ~ 5117234 (-) |
| otol1b | otol1,LOC107734882 | coding | downstream | 252256 | 5073164 ~ 5079638 (-) |
| znf407 | znf407,LOC104948785 | coding | downstream | 275676 | 5043496 ~ 5056218 (-) |
| il12a | NA | coding | upstream | 38915 | 5371068 ~ 5376970 (-) |
| schip1 | schip1,LOC103369651,LOC106580942,LOC104954265,LOC102193686,LOC106612913,LOC100701131,LOC107081925,LOC103148079,LOC108240933,LOC101468843,LOC107750091,LOC108424074,LOC107551285,LOC108280660 | coding | upstream | 52404 | 5384557 ~ 5690974 (-) |
| mfsd1 | mfsd1,LOC106580941 | coding | upstream | 361511 | 5693664 ~ 5709552 (-) |
| gfm1 | gfm1 | coding | upstream | 384436 | 5716589 ~ 5730765 (-) |
| LOC117599999 | LOC108280333 | coding | upstream | 400600 | 5732753 ~ 5734846 (-) |
| G315075 | NA | non-coding | downstream | 104277 | 5227228 ~ 5227617 (-) |
| G315069 | NA | non-coding | downstream | 112065 | 5219549 ~ 5219829 (-) |
| G315021 | NA | non-coding | downstream | 115306 | 5211957 ~ 5216588 (-) |
| G315067 | NA | non-coding | downstream | 119988 | 5211673 ~ 5211906 (-) |
| G315019 | NA | non-coding | downstream | 120571 | 5132366 ~ 5211323 (-) |
| G315142 | NA | non-coding | upstream | 1516 | 5333669 ~ 5333879 (-) |
| G315172 | NA | non-coding | upstream | 116771 | 5448924 ~ 5449129 (-) |
| G315175 | NA | non-coding | upstream | 129234 | 5461387 ~ 5461591 (-) |
| G315213 | NA | non-coding | upstream | 232410 | 5564563 ~ 5564775 (-) |
| G315225 | NA | non-coding | upstream | 278601 | 5610754 ~ 5610980 (-) |
| trnat-agu_16 | NA | other | downstream | 110059 | 5221762 ~ 5221835 (-) |
| trnat-agu_15 | NA | other | downstream | 110878 | 5220943 ~ 5221016 (-) |
| trnat-agu_14 | NA | other | downstream | 111360 | 5220461 ~ 5220534 (-) |
| LOC113543250 | znf236 | other | downstream | 335889 | 4963065 ~ 4996005 (-) |
| fbxl4 | fbxl4 | other | downstream | 514723 | 4800480 ~ 4817171 (-) |
| limk1a | limk1,LOC107663742 | other | upstream | 1261116 | 6593269 ~ 6649395 (-) |
| rps28 | rps28 | other | upstream | 2232928 | 7565081 ~ 7568134 (-) |
| vcpip1 | vcpip1 | other | upstream | 3145070 | 8477223 ~ 8488629 (-) |
| G317176 | NA | other | upstream | 3551496 | 8883649 ~ 8885709 (-) |
| pitrm1 | pitrm1,LOC107698483,LOC107679400 | other | upstream | 3571671 | 8903824 ~ 8954110 (-) |
