LOC117599999 (LOC108280333)


Basic Information

Item Value
gene id LOC117599999
gene name LOC108280333
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5732753 ~ 5734846 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314895.1
GCAAACCACGTTGCAGTCCATATGTGATAAAAATGCTGGAATGGTTCGAGACATCTAAGGGCTTCCTCTTGATCCTGGAGCGGCCCCACAAATGTATCACCCTCTACAAGTTCTGTAAACGTCAACAAGGCAGAATATCTGAAGATCTGGCTCGAATCATCATGTGGAAAGTAGTTCAGGCTGCAATTCACTGCTGGAACAATGGTGTGCTCCACCGAGACATTAAAGAAGACAACATTCTCCTGAACCCTGAGACCCTGGAATTGAAGCTGATAGATTTTGGCTATGCTTTCTTACTTAAGGACAAGCCCTACAAGGCATTTGGAGGCCCTCCAATTGTCCTCCCAACTGGTTGGatatttccaaaaaatatcAGGCCGGAATCTGTCACCGTCTGGGATCTTGGTGTTCTCCTCTACACCCTGACATGTGGAGAAAAGCCTTTATATTGCCGCACCCCGTTCTTCATCAATGGGCTGTCTGACGCCTGCTGCAGTCTGTTAAACTGGTGTCTGCAAGAAGACATTAAAAAACGACCAGTCTTGGAGCAGATCCTCAAGCATGACTGGTTCCGAGACAAGACTCCctccagaagaagaagaagaagaagaagaagaaagacatAAAAGCAGTCAGGGGTTGCAGGGGTAGTGAGACTCTCCTCAGTATCCTCATGTGCATGTGTCAAACTTTCCAACAAAGTCATGAAGTGATGTAAGTCGTGAAATGGTAATACACTTGGCTTTGTGTGTAAATGCCTAAGTATCCCACTGCCAGGTGTCAGTCAGCTCCCCCACAGTGGGAAAGAGGGGAGCGACACCAGCAGGTGGAGTAGAATCTTAGCAGTAGAACAGCTACAGTACTTCAACAGTGTGCCCTATGTGAAGAATTATGATAAGTTCTTTAGAGCGTTCAAGCACACAAACTCAGAGAGAGGATCCGACCTAGAGTGGAGAATGACAAGCAAACcaatgttttgtgtgttattctgctaATGTAGCAGGCTCAGTAGCGAACAGCGCACGGTGCAGTGAGGGAAACCCACTCAACCAGGTTTTCAGAGGTGTGGTGCAGTGGGGGAAGTTTGTGTGACAAAGACTCTTGAGTAGATGACACCGAGGGAGAACTCGACCCGGTGATGAGATGATGGAAGGGTGGAGAGAACCCAAGTACTGCCCCAGTATGCGCGTTAGCAGAGTCCTGCTAAATAAAGTAGATTTAGGGAGTAAGTGTGCGATATGGCACCACTGGCAGCATTTATTAACATGCTTGGTAGGCTAGACAGAGGGGAATGTGAAATGCTCAGAGGCACGTAGGGAGAAAACAACCTGGCAGGGATGAAATGTGAGTGCTGATCTTGAGCAACATCACAGAGCAGTTTGCGTAGTTAACTTGCACAGGTACTGCCACTGCATGCCAGATGAAGTGAAATATTATATTGCAAATAGTGTTTCATGCATCATTTTGTGATTGTTGAAGTGTTTGCATGTTTAAACATGCACAGTAGAAGATAACTGATTTTTTACTGCCCCTCACTCCTAGGAGTGGTGACATAACATCCATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314895.1 True 1566 mRNA 0.46 4 5732753 5734846

Neighbor

gene id symbol gene type direction distance location
gfm1 gfm1 coding downstream 1988 5716589 ~ 5730765 (-)
mfsd1 mfsd1,LOC106580941 coding downstream 23201 5693664 ~ 5709552 (-)
schip1 schip1,LOC103369651,LOC106580942,LOC104954265,LOC102193686,LOC106612913,LOC100701131,LOC107081925,LOC103148079,LOC108240933,LOC101468843,LOC107750091,LOC108424074,LOC107551285,LOC108280660 coding downstream 41779 5384557 ~ 5690974 (-)
il12a NA coding downstream 355783 5371068 ~ 5376970 (-)
LOC113543027 NA coding downstream 403141 5326516 ~ 5329612 (-)
mlf1 mlf1 coding upstream 10561 5745407 ~ 5756063 (-)
rsrc1 rsrc1 coding upstream 23874 5758720 ~ 5891773 (-)
LOC113543271 LOC108280635,LOC108424020 coding upstream 374523 6109369 ~ 6122309 (-)
mmp28 mmp28 coding upstream 414070 6148916 ~ 6177313 (-)
taf15 taf15,LOC103474459,LOC106937209,LOC102220690 coding upstream 443011 6177857 ~ 6184553 (-)
G315381 NA non-coding downstream 9431 5722950 ~ 5723322 (-)
G315225 NA non-coding downstream 121773 5610754 ~ 5610980 (-)
G315213 NA non-coding downstream 167978 5564563 ~ 5564775 (-)
G315175 NA non-coding downstream 271162 5461387 ~ 5461591 (-)
G315172 NA non-coding downstream 283624 5448924 ~ 5449129 (-)
G315393 NA non-coding upstream 165264 5900110 ~ 5900708 (-)
G315595 NA non-coding upstream 488509 6223355 ~ 6224613 (-)
G315604 LOC108280887,LOC103033590,LOC108424028 non-coding upstream 528782 6263628 ~ 6264498 (-)
G315606 NA non-coding upstream 531083 6265929 ~ 6266300 (-)
G315721 NA non-coding upstream 739486 6474332 ~ 6474532 (-)
trnat-agu_16 NA other downstream 510918 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 511737 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 512219 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 736748 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 915582 4800480 ~ 4817171 (-)
limk1a limk1,LOC107663742 other upstream 858423 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 1830235 7565081 ~ 7568134 (-)
vcpip1 vcpip1 other upstream 2742377 8477223 ~ 8488629 (-)
G317176 NA other upstream 3148803 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 3168978 8903824 ~ 8954110 (-)

Expression


Co-expression Network