rps28 (rps28)


Basic Information

Item Value
gene id rps28
gene name rps28
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7565081 ~ 7568134 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU374665
AGTTTCCATAAGCCCACGTGACATATTTCAGTTCACATCAAAAGACCCGGAACCGGAAACGTATCTGGACTAACTgtaTATATAGGCTCCTCGCACCACGTGACTTCCTTTCCCAGCGAAGCTGAAATCATGGACGCCAGCCGCGTGCAGCCTATCAAGCTCGCCAGAGTCACTAAAGTGCTCGGGAGAACCGGCTCCCAGGGCCAGTGCACCCAGGTGCGCGTCGAGTTCATGGACGATAGCAACCGAACCATCATCAGAAATGTGAAGGGCccagtgagagagggagatgttCTGACACTTCTGGAGTCTGAAAGAGAAGCAAGAAGGCTCCGATAGTGTGAGCTGGTTACAAGCTTTGAAGACCCTGGTCCCAATGAAGCAAGTCACCACCACCATCAGCTCATAGTTCAGATACATgctaattcaaataaaatgaaaaattggtCATATCCTCTGTCTTGTCTTGTGGGTATATTatccttattttgttttttggataAAATCTGGATAGCAACATGTTGGTCTGTTAC
>TU374667
AGTTTCCATAAGCCCACGTGACATATTTCAGTTCACATCAAAAGACCCGGAACCGGAAACGTATCTGGACTAACTGTACGCTATTTTGCGCAGAAATAATATCTTAAATTCACAAATATATTGAGTATTCgagaacaaatatttattaaacactgaaatataaataaaataaaccgtaataaatggagaaaatgccatttttattttaggtaTATATAGGCTCCTCGCACCACGTGACTTCCTTTCCCAGCGAAGCTGAAATCATGGACGCCAGCCGCGTGCAGCCTATCAAGCTCGCCAGAGTCACTAAAGTGCTCGGGAGAACCGGCTCCCAGGGCCAGTGCACCCAGGTGCGCGTCGAGTTCATGGACGATAGCAACCGAACCATCATCAGAAATGTGAAGGGCccagtgagagagggagatgttCTGACACTTCTGGAGTCTGAAAGAGAAGCAAGAAGGCTCCGATAGTGTGAGCTGGTTACAAGCTTTGAAGACCCTGGTCCCAATGAAGCAAGTCACCACCACCATCAGCTCATAGTTCAGATACATgctaattcaaataaaatgaaaaattggtCATATCCTCTGTCTTGTCTTGTGGGTATATTatccttattttgttttttggataAAATCTGGATAGCAACATGTTGGTCTGTTAC
>XM_026941535.2
taggtaTATATAGGCTCCTCGCACCACGTGACTTCCTTTCCCAGCGAAGCTGAAATCATGGACGCCAGCCGCGTGCAGCCTATCAAGCTCGCCAGAGTCACTAAAGTGCTCGGGAGAACCGGCTCCCAGGGCCAGTGCACCCAGGTGCGCGTCGAGTTCATGGACGATAGCAACCGAACCATCATCAGAAATGTGAAGGGCccagtgagagagggagatgttCTGACACTTCTGGAGTCTGAAAGAGAAGCAAGAAGGCTCCGATAGTGTGAGCTGGTTACAAGCTTTGAAGACCCTGGTCCCAATGAAGCAAGTCACCACCACCATCAGCTCATAGTTCAGATACATgctaattcaaataaaatgaaaaattggtCATATCCTCTGTCTTGTCTTGTGGGTATATTatccttattttgttttttggataAAATCTGGATAGCAACATGTTGGTCTGTTACTGAGGTTTCAATAAATGCACACAGCCCATAA

Function

symbol description
rps28 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; maturation of SSU-rRNA; and ribosomal small subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in cytoplasmic side of rough endoplasmic reticulum membrane and polysomal ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond Blackfan anemia 15 with mandibulofacial dysostosis. Orthologous to human RPS28 (ribosomal protein S28).

NR:

description
PREDICTED: 40S ribosomal protein S28 isoform X2

GO:

id name namespace
GO:0006407 rRNA export from nucleus biological_process
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU374665 False 533 lncRNA 0.47 5 7565112 7568134
TU374667 True 667 lncRNA 0.42 4 7565112 7568134
XM_026941535.2 False 492 mRNA 0.47 4 7565081 7567928

Neighbor

gene id symbol gene type direction distance location
mrps22 mrps22 coding downstream 52131 7506443 ~ 7512950 (-)
get1 wrb,LOC108280886,LOC107730994 coding downstream 105244 7453778 ~ 7459837 (-)
sh3bgr LOC108280172,LOC108410487 coding downstream 124580 7424189 ~ 7440501 (-)
bace2 LOC108280663 coding downstream 330581 7207427 ~ 7234500 (-)
nop53 gltscr2 coding downstream 419974 7129376 ~ 7145107 (-)
cdyl cdyl coding upstream 44979 7613113 ~ 7628305 (-)
rpp40 rpp40 coding upstream 68437 7636571 ~ 7642313 (-)
mrpl34 mrpl34 coding upstream 189711 7757845 ~ 7759549 (-)
LOC113543184 vmhcl,LOC108280896,LOC108428347,LOC102294892,LOC102200768,LOC101484004 coding upstream 194234 7762368 ~ 7784373 (-)
pik3cb pik3cb,LOC107726123 coding upstream 236002 7804136 ~ 7837149 (-)
G316318 ret2,rbp2,LOC103044214,LOC108410483,LOC108239352,LOC107567571,LOC106613114 non-coding downstream 60352 7500415 ~ 7504729 (-)
G316311 LOC108280674 non-coding downstream 70710 7492416 ~ 7494371 (-)
G316303 NA non-coding downstream 102204 7462514 ~ 7462877 (-)
G316274 NA non-coding downstream 153238 7400353 ~ 7411843 (-)
G316269 NA non-coding downstream 168505 7396345 ~ 7396576 (-)
LOC117600000 NA non-coding upstream 1099 7569233 ~ 7570471 (-)
G316377 NA non-coding upstream 38090 7606224 ~ 7607655 (-)
G316394 NA non-coding upstream 100622 7668756 ~ 7669002 (-)
G316409 NA non-coding upstream 121358 7689492 ~ 7689902 (-)
G316421 NA non-coding upstream 135535 7703669 ~ 7729736 (-)
limk1a limk1,LOC107663742 other downstream 915686 6593269 ~ 6649395 (-)
trnat-agu_16 NA other downstream 2343246 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 2344065 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 2344547 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 2569076 4963065 ~ 4996005 (-)
vcpip1 vcpip1 other upstream 909089 8477223 ~ 8488629 (-)
G317176 NA other upstream 1315515 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 1335690 8903824 ~ 8954110 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other upstream 1401070 8969204 ~ 8973275 (-)
ccl20a.3 LOC108261059 other upstream 2959148 10527282 ~ 10528279 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location