ccl20a.3 (LOC108261059)


Basic Information

Item Value
gene id ccl20a.3
gene name LOC108261059
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10527282 ~ 10528279 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376553
ACATACTGCCGGAAGAGTAAATCAAACACAATGGCCCAGATTAGTGGTGCAGCTTTCACGCTTCTGCTGCTTCTGACAGTCAGTCTGTTCTGTCAAGACACTGCTGCTTGGGCATGTTGCAGGCGATATTCCAAAGGACAGCTCCCTGTTCCTTTAATCCGAGGATATTCAATCCAGACCATCCATGCACACTGCAACATCAATGCTGTCATTTTCCACACCTCTGGAGGCAGAAAAGTATGTGCTGATCCTTCTCTGCCCTGGGTGACAGACAGCATCCAGAAACTAACGAAAAGAGTGTGGGCTATGAAGAAGCAAGAAAAACAGCAGTGAAGAAAGAGAAGCTAATTTTTTTAAggcaataatatatatatatatatatatatatcaaatcaaaatacatatacac
>XM_026925864.2
ATAAAGCTGCTGCTCTCAGACCAAACAACACATACTGCCGGAAGAGTAAATCAAACACAATGGCCCAGATTAGTGGTGCAGCTTTCACGCTTCTGCTGCTTCTGACAGTCAGTCTGTTCTGTCAAGACACTGCTGCTTGGGCATGTTGCAGGCGATATTCCAAAGGACAGCTCCCTGTTCCTTTAATCCGAGGATATTCAATCCAGACCATCCATGCACACTGCAACATCAATGCTGTCATTTTCCACACCTCTGGAGGCAGAAAAGTATGTGCTGATCCTTCTCTGCCCTGGGTGACAGACAGCATCCAGAAACTAACGAAAAGAGTGTGGGCTATGAAGAAGCAAGAAAAACAGCAGTGAAGAAAGAGAAGCTAATTTTTTTAAggcaataatataatataatatatatatatatatatatatatatatata

Function

NR:

description
C-C motif chemokine 5-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005125 cytokine activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376553 False 409 TUCP 0.42 5 10527282 10528250
XM_026925864.2 True 434 mRNA 0.41 4 10527350 10528279

Neighbor

gene id symbol gene type direction distance location
camsap2b LOC108261060,LOC108428284 coding downstream 66656 10393883 ~ 10460626 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding downstream 134775 10347841 ~ 10392507 (-)
LOC117599941 LOC107739197,LOC107573659 coding downstream 584970 9935223 ~ 9942312 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding downstream 632515 9874783 ~ 9894767 (-)
LOC113533399 LOC108280347 coding downstream 738629 9715945 ~ 9788653 (-)
LOC113533548 NA coding upstream 41906 10570185 ~ 10584166 (-)
chrng LOC108428254 coding upstream 56239 10584518 ~ 10596849 (-)
LOC113533461 prss56 coding upstream 73419 10601698 ~ 10607930 (-)
LOC113533519 prss56,LOC107579557 coding upstream 83325 10611604 ~ 10632678 (-)
LOC113533482 NA coding upstream 106282 10634561 ~ 10640785 (-)
G317953 NA non-coding downstream 808 10526265 ~ 10526474 (-)
G317943 NA non-coding downstream 4854 10520613 ~ 10522428 (-)
G317941 NA non-coding downstream 7019 10518471 ~ 10520263 (-)
G317937 NA non-coding downstream 30329 10496720 ~ 10496953 (-)
G317918 NA non-coding downstream 179962 10344638 ~ 10347320 (-)
G317977 NA non-coding upstream 34088 10562367 ~ 10562528 (-)
G317976 NA non-coding upstream 39469 10567748 ~ 10568905 (-)
G318127 NA non-coding upstream 194627 10722906 ~ 10723111 (-)
G318128 NA non-coding upstream 194869 10723148 ~ 10724215 (-)
G318198 NA non-coding upstream 313389 10841668 ~ 10843291 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 1554007 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 1573172 8903824 ~ 8954110 (-)
G317176 NA other downstream 1641573 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 2038653 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 2959148 7565081 ~ 7568134 (-)
wu:fb63a08 LOC108280878 other upstream 1091597 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 2380174 12908453 ~ 12928071 (-)
ccl25a NA other upstream 3084237 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 3136902 13665181 ~ 13680110 (-)
theg NA other upstream 4203455 14731734 ~ 14745487 (-)

Expression


Co-expression Network