LOC113533461 (prss56)


Basic Information

Item Value
gene id LOC113533461
gene name prss56
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10601698 ~ 10607930 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314627.1
CATTGTGAAACAGGATTCTTGTAtcattgttgttttattattttaaaaactgattattgtattgttttaaaaGAGCAGGTAGGCCACTCCTCCATGCCTACTGCCCAAAATCCACCGTATGTATTTGAGCAGGTGGGCCCACTAGTGGATGACTGGGAGAATTACCTCAACAGAATTGCTGTTAATTTGGAACAGCACAACAAACACGAGGAACCAAATCAGCACAATAAAGAGGAGAACCTCTTCCAGCAGGACAAAAACTCAGCACTTCACCAGCTCGACAGAGATCTACGCTCCACCATTACTTTTCTTTGCTTCAGATTGGCATCTCGCCACATTTCTGCACTTAAAAATTTGAAGAGACACTCCTTTATCATGGACTTTATCATTTCCGGAAGAGCATCTGATGTTCTAGGTGGAACATCGGAACCTGCTCTGTATCCGCACATGAAGAACATTGTGAATTGGCGCACTCTAGTGTTTCAGCTCCTTAGTTGCAGTGATATGGGAAGACCTGAAGTCAAGACAAGTAAAACAGAAAATCTGTTAAGAGGAGCGCATACGGTACCCAGAGCTGGAGAGCTTGTTGCACTTCAGGAGGTTAGGACCAAGGAGGGCTCTGTGCAGGGTGGAACTCACTCAAGGATGTCTGATTTACTGGAaggaagactgccagtgacaaGGTCCACCCCTACCCAGCTTGCTCTGCTACTTCAACTGTACTCCAACAAGAAGAAAAGTGtgtttgctCAAAGGAGACACAGAAGACAGTTGCTTGATGGACAGATCCGTGAAGCAAGTAACAAAGTGTGTCCTGGGGTCGCAGAGTTGGCACAGCAGGTCATTGTTACGAAGGAGATGTACAACTGGATTCTAAACATCACACCAAGCAACCTCAACATGAATTTCCAAGAGgTGCTGGTTGACCTCACCACAAAAAATGAACATGGTCTATATGAAGCACGCGTCAAAGCAACTATAGGTGGACATCTGTTGACCTTCTACAGCCTTGTGGGCTtggaaaatgattcattttttaggAGCATGCCACACATCATTGCTCTAGCACTTGATGCACTTAAAACTTAAAGAGGAATGTAAACAAATATACACTTCACTCTGCAGTCTGTATTGGTGTGGACAGTGGGTGTTAATCCCCAATCTTGAATCCAGCACTATCTGGATCCAGTATAATTTCACTTGTTTCAAGTGACATACAGCAGTAAACTTCATTGACGTCTTCTTCATGGGCATGTAACTTGCTAGAGAAAAGTTACTCACTATTATTTGAAGGCTCCTCCCTTCAACAGCTGGCAGAACTGATTCAAGTGATGCATTTTGTCCACAGAATTCTGCAGCCTGAGACATCAGACTAGGTGTAAATTATAATGTTTCATAAAGTAAAGAAATTTCAGCAGCATATTAGCTGACAGAGAGATGATCGCTTCTTGAAGTATTCTTCAGTAGTCATATTATAGGGGAAGTGCCACATTTTGGGGAACAGCGTGTCCAAAACgtttaatagtttattttaaagacttttaatataaatactTATACATTATGTCAGACACTGAGCAGGGTTCTATGAGTTGGAACTAGCTGGGACTTGGAGTTGTTCTAGAACTGATGTTCTGATGTTCATATTTTTCACTGAAAGTATTTCTATGGGTCTTGTGACCCATATGGATCGTGTGTCCTTAATTTATTCATTGCAATACAGGAGAGGTGGAACCTCTTTTTGAACTGgactgatgtcatttttttttatttatttattttata

Function

symbol description
prss56 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Human ortholog(s) of this gene implicated in isolated microphthalmia 6. Orthologous to human PRSS56 (serine protease 56).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314627.1 True 1785 mRNA 0.41 5 10601698 10607930

Neighbor

gene id symbol gene type direction distance location
chrng LOC108428254 coding downstream 4849 10584518 ~ 10596849 (-)
LOC113533548 NA coding downstream 17532 10570185 ~ 10584166 (-)
camsap2b LOC108261060,LOC108428284 coding downstream 141072 10393883 ~ 10460626 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding downstream 209191 10347841 ~ 10392507 (-)
LOC117599941 LOC107739197,LOC107573659 coding downstream 659386 9935223 ~ 9942312 (-)
LOC113533519 prss56,LOC107579557 coding upstream 3674 10611604 ~ 10632678 (-)
LOC113533482 NA coding upstream 26631 10634561 ~ 10640785 (-)
alg3 alg3,LOC107730451,LOC107660011,LOC107692886,LOC107557882,LOC107749127 coding upstream 96531 10704461 ~ 10711641 (-)
ece2a ece2 coding upstream 127224 10735154 ~ 10830170 (-)
yeats2 yeats2,LOC107578903 coding upstream 291335 10899265 ~ 10952633 (-)
G317976 NA non-coding downstream 32793 10567748 ~ 10568905 (-)
G317977 NA non-coding downstream 39170 10562367 ~ 10562528 (-)
G317953 NA non-coding downstream 75224 10526265 ~ 10526474 (-)
G317943 NA non-coding downstream 79270 10520613 ~ 10522428 (-)
G317941 NA non-coding downstream 81435 10518471 ~ 10520263 (-)
G318127 NA non-coding upstream 114976 10722906 ~ 10723111 (-)
G318128 NA non-coding upstream 115218 10723148 ~ 10724215 (-)
G318198 NA non-coding upstream 233738 10841668 ~ 10843291 (-)
G318202 NA non-coding upstream 237793 10845723 ~ 10921562 (-)
G318293 NA non-coding upstream 399222 11007152 ~ 11009170 (-)
ccl20a.3 LOC108261059 other downstream 73419 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 1628423 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 1647588 8903824 ~ 8954110 (-)
G317176 NA other downstream 1715989 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 2113069 8477223 ~ 8488629 (-)
wu:fb63a08 LOC108280878 other upstream 1011946 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 2300523 12908453 ~ 12928071 (-)
ccl25a NA other upstream 3004586 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 3057251 13665181 ~ 13680110 (-)
theg NA other upstream 4123804 14731734 ~ 14745487 (-)

Expression


Co-expression Network