LOC113533482


Basic Information

Item Value
gene id LOC113533482
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10634561 ~ 10640785 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314601.1
TTAGATAACgtaagatagatagatttatttatttatttatttatttatttattttacctcaGTAGAATAATCTGTTCGCGTTTCTGAAATGGTAAACAACTGTCATTCAACGTCATTCAGTAGAAATAGGTGGcatttaatgaaagaaaagggCTCGCGGTGGCTGAACTTCAGCAGAACTGAACTGACTTAATCAGATAAGCTGCACATCAACAGCTGCCACATCCAGATTTAAAACGCGCTTTCTAACTTTTAATATTGGGACTGTGTGTATTAATTAAACGCTGTGTATTAATTAAACGCTCGTAGTTATTTTAGTGTATGGTACATAGTAAATGTAACTGACGATGGTTGACTTTGTCCTTTCTTCAATTCAGGGATAGTTTAGCTGGCTGGCTAAGTAACTACTAGCATAACTTATTAAACTTTGTTCAGCAATTTTCAGATATAAAGTTCAAACAGAatttactacttttttttttcaattttcttcTATTAAGAATTTCTGCATCTTAAAAAGTCTTTTACTAGTCTTTTTGATAGTCAGCTGAGTGGCTCTGGAGCCATGGCTAATCCTCTAGAGCAGTTCATTTTACTGGCACAAAACCTGAAGGGAGCCGCTTTAATTTCACTTATAACCCGGTTGTTGGAAACCCCAGGAGTTTATTCTTTCGGAGAGTTTCTGGAACTGCCATGTGTTAAACAGCTCACCAATGGTCAGAGCCATGAATACTCGAAGCTTTTGGATGTGTTTGCTTATGGCACCTATCATGACTATAAAGCCAGCAAGGACATCTTGCCTCCACTGTCTGAAGCCCAGGAGAATAAATTAAGGCATTTGACCATCGCAAGTTTGGCTGCAAACACTCAGtgtatCCCATACAGTGTACTTCAGAAGGCTCTTGTGGTGGACAGTGTGAGGCAGCTGGAGGACTTGTTAATTGAAGCTGTGCATTTGAATGTGATCAGAGGAAAACTGGACCAGTGCAAACAACAGCTGGAGGTTGAAGCCTGCATCAGTCGGGACATGTGTTCAGAGAACACGGGACAGTTGGTCCAAACACTCACCAACTGGTGTGCTggctgtgagagtgtgtggtaTGCAATAGAGATGCAGGTAGACAGAGTGAAGCAGAGCAGAGAGTCTTGTTTGCAAGCTCAGCAGCAGATCTATGCTGAGGTGTCAAAAATTCGTAAAACGATGGCAGGTGCCACATCTTCATTTAACGAGGAAATGCGATTTCGGTTTAAAACACTAACAAGAGAAGGAACCCTACCTCTGCAaaacactagtgtgtgtgtgccgacACAGTCCAGTGCTCCTTGCAAttgatttttgttcatttaaatttaacatttgGATTTAGAATTGGAATTTCTGTTTTAACAATGTTTGCTCCTGCTTAGTTTCAGTTTGCCTCtatgttcacattaaaaaaaaaagttgtatcAAACATTTGAGTTGTATAAatcagatgaaaaaaatgtacttgCTTTGTTGTTTATGATTTTTGTCTATATTGTTCAAGCCTTGGTTATTTTCATATTCCAGTGTATGAATTTGAACAAGTTTTTGCTTGTCatactttcttttcttctatTGTCCTTCATAAATATGTACAACAATTTTCCTCTTGTTGtgttcatactgtatatcttatTACTCCATTACATACTTGTCTAGTGATGAGGTCAGTGATACAAAGGAGCTAACTTGCTGTAGTTGTACTGCTAACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314601.1 True 1738 mRNA 0.38 6 10634561 10640785

Neighbor

gene id symbol gene type direction distance location
LOC113533519 prss56,LOC107579557 coding downstream 1883 10611604 ~ 10632678 (-)
LOC113533461 prss56 coding downstream 26631 10601698 ~ 10607930 (-)
chrng LOC108428254 coding downstream 37712 10584518 ~ 10596849 (-)
LOC113533548 NA coding downstream 50395 10570185 ~ 10584166 (-)
camsap2b LOC108261060,LOC108428284 coding downstream 173935 10393883 ~ 10460626 (-)
alg3 alg3,LOC107730451,LOC107660011,LOC107692886,LOC107557882,LOC107749127 coding upstream 63676 10704461 ~ 10711641 (-)
ece2a ece2 coding upstream 94369 10735154 ~ 10830170 (-)
yeats2 yeats2,LOC107578903 coding upstream 258480 10899265 ~ 10952633 (-)
klhl24a klhl24,LOC103026629,LOC107721788,LOC107659963 coding upstream 319114 10959899 ~ 10987648 (-)
LOC113533462 LOC108280822 coding upstream 353965 10994750 ~ 10995862 (-)
G317976 NA non-coding downstream 65656 10567748 ~ 10568905 (-)
G317977 NA non-coding downstream 72033 10562367 ~ 10562528 (-)
G317953 NA non-coding downstream 108087 10526265 ~ 10526474 (-)
G317943 NA non-coding downstream 112133 10520613 ~ 10522428 (-)
G317941 NA non-coding downstream 114298 10518471 ~ 10520263 (-)
G318127 NA non-coding upstream 82121 10722906 ~ 10723111 (-)
G318128 NA non-coding upstream 82363 10723148 ~ 10724215 (-)
G318198 NA non-coding upstream 200883 10841668 ~ 10843291 (-)
G318202 NA non-coding upstream 204938 10845723 ~ 10921562 (-)
G318293 NA non-coding upstream 366367 11007152 ~ 11009170 (-)
ccl20a.3 LOC108261059 other downstream 106282 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 1661286 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 1680451 8903824 ~ 8954110 (-)
G317176 NA other downstream 1748852 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 2145932 8477223 ~ 8488629 (-)
wu:fb63a08 LOC108280878 other upstream 979091 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 2267668 12908453 ~ 12928071 (-)
ccl25a NA other upstream 2971731 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 3024396 13665181 ~ 13680110 (-)
theg NA other upstream 4090949 14731734 ~ 14745487 (-)

Expression


Co-expression Network