G317176


Basic Information

Item Value
gene id G317176
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8883649 ~ 8885709 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375659
ACGGCTTTTCCTCCTAAGACGGCTTAGGTCCTTCGACATCTGCAGGAAGATGCTACATATGTTTTACAAAACTACAGTAGCAAGTGTGCTGTTTTACACTGCAGTCTGCTGTGGAGGCAGCATAAAGCAGAAGGATGCAAGGCGGGTGGACAAACTGGTGCAAAAAGCTTCTTCAGTGACTGGAATGAGGTTTGAATCACTGGAGGCCGTGGTGGAGAGATGCACACAGAAAAATCTAGAGGACATTCTGGAATATCCTGACCATCCCCTACACAACACCACGATGGACCAGAGAAGCAGCTGCAGTGGACGACTCACCTCAGTGCGCTGCAGGACTGAACGATACAGGAGATCCTTCATCCCCACTGCCATCAGGCTCTACAACACCTTAGCCAATGGCAGATGACTAATCACTACTCTCATTACTTTACTACTTCGCTACTTTACTACTCTCACTAATTTCTATTACTCTCACTACTttttactactcttactactttctttcttacttatctacaagaccacctgaatttcccttcggggattaataaagtttttatcttatcttatcttaattaAAGTgaaacaacaatgaaaatagCGCAGTCATACTTAATTAATACGTATGCACACAATGCACAATGCACCTGTCTGAAGGTAAGTAAACTAACCAACCATTAAGTAAACTAAATAAACTCAACACTCAGTGGTTCCTGAAaggaacaaacacacacgcgcatgcACAAGTGCACACACCAATTGTTATGTTGCCAGAGTGTCCTACTGACCATGCATTGAAAAAATACAGCTATTTTAGTGCATACATGCCATGGCCCAAAATTTCAtacattaggcagcaagtgaacagtcagttctcgaagttgatgtgttggaagctggaaaaatgggcaagcataagtaTCTGAGCGCTAAATTGTGAAGGCTAGaagggtcagagcatctccaaaacggcaggtcttgtgtggtattcccggtatgcagtggttagtacctaccaaaagttgtccaaggaaggacaaccggagacagggtcatgggcgcccaaggctcattgatgagcaagacaaagagttcaaggtgttgaattGGCCTTCCAGTTCTcaagatctcaatccaatcaagcatctgtgggatgtgctggagaaagACCGATCCATGGAGGCGCTAACTCAaatcgcaacttacaggacttaaatgaTCTCCTGCTatcgtcttggtgccagataccacagcacaccttcagaggtcttgtggagtccatgcctcgatgggtcagagctgttttggcagcacagtGGGGAcctgcaggtgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375659 True 1334 TUCP 0.45 3 8883649 8885709

Neighbor

gene id symbol gene type direction distance location
ift57 ift57,LOC108280285 coding downstream 125621 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 169391 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 195718 8678819 ~ 8687931 (-)
LOC113543001 LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634 coding downstream 331641 8505221 ~ 8552008 (-)
basp1 LOC108280584 coding downstream 703548 8155454 ~ 8180101 (-)
epc1b LOC108280341,LOC108442943 coding upstream 530480 9416189 ~ 9486194 (-)
zeb1a LOC108280338 coding upstream 765866 9651575 ~ 9685427 (-)
LOC113533399 LOC108280347 coding upstream 830236 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 989074 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 1049514 9935223 ~ 9942312 (-)
G317173 urb1 non-coding downstream 28184 8845325 ~ 8855465 (-)
G317134 NA non-coding downstream 68670 8814761 ~ 8814979 (-)
G317129 NA non-coding downstream 77592 8805123 ~ 8806057 (-)
G317128 NA non-coding downstream 78636 8803451 ~ 8805013 (-)
G317123 NA non-coding downstream 83133 8800282 ~ 8800516 (-)
LOC117599966 NA non-coding upstream 11420 8897129 ~ 8898577 (-)
G317175 NA non-coding upstream 73100 8958809 ~ 8959053 (-)
LOC113543052 NA non-coding upstream 157643 9043352 ~ 9072872 (-)
G317314 NA non-coding upstream 190755 9076464 ~ 9077234 (-)
LOC113543051 NA non-coding upstream 207485 9093194 ~ 9113004 (-)
vcpip1 vcpip1 other downstream 395020 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 1315515 7565081 ~ 7568134 (-)
limk1a limk1,LOC107663742 other downstream 2234254 6593269 ~ 6649395 (-)
trnat-agu_16 NA other downstream 3661814 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 3662633 5220943 ~ 5221016 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 18115 8903824 ~ 8954110 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other upstream 83495 8969204 ~ 8973275 (-)
ccl20a.3 LOC108261059 other upstream 1641573 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 2734167 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 4022744 12908453 ~ 12928071 (-)

Expression


Co-expression Network