LOC113543001 (LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634)


Basic Information

Item Value
gene id LOC113543001
gene name LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8505221 ~ 8552008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940902.2
GCAATCATGACAGCGTAGACGCGTGTGTGCTAAAAACAGAGTGCGCACCGTGGCACCGCGGCACCGCGGGAGGGGGAGGAAGAAACTTCAGCGCATGGGTGACGCATTCCTCACGCAGTGACACGGCActattaacacattttatttcgTTGCCAGAGCTAGGTCGTTGTTGCCGgtgaaagagcaaaaaaagaTACTCGGGCGCATTTCTTTCGGTGTGAGTCACGAGTCTGTCTCTTGAACAATCGCATTCCAGAAACCGCGACACCATGGACAGCCTGGAAAAGCAGCTAATCTGTCCGATCTGCCTCGAGATGTTCACCAAGCCGGTGGTGATCTTACCCTGTCAACACAACCTCTGCCGGAAATGTGCCAATGACATATTTCAGgcctcCAATCCCTATTTGCCAACGCGTGGGGGTTCTACAGTTAGTTCTGGTGGCCGGTTCCGCTGCCCCTCCTGCAGACACGAAGTGGTTCTAGATCGGCATGGTGTTTATGGACTGCAACGGAACCTGCTAGTGGAAAACATAATCGACATGTTCAAACAGGAGACAATCAGtaaaaacaataaagaagaGCCACAGCAGAAACCAGCTGTAATGGCGTGCGAGGTACACGAGGATGAGAAGATTAATATCTATTGTGTGTCCTGTTCTGTTCCCACTTGCTCCCTGTGCAAAGTGTTTGGTGCTCATCAGAACTGTGAAGTTGCACCACTCAGTACTGTCTacgagagccagaagACAGAGTTGTCAGAGGGTGTTGCTATGCTAGTGGGAAACAATGACAGAATTCAGGCCATCATCAGCCTGCTGGAGGAGAGCTGCAGAACAgtggagGAGAATGGGCGCAAGCAGAAATCGCATGTGTGCGAATCATTTGATCACCTGTATGCATTGCTGGAAGATAGGAAAGGAGAGCTGACACTGAAAATCAGCTCTGAACAGCAGGAGAAACTCGATTACATTAAAGGCCTAcagcacagGTACACAGAGCACCTGGACAAGAGTGCAAAGCTGGTAGAGACAGGAATCCAAACCATGGAGGAGCCAGAGATGGCCATCTTCCTGCAGAATGCAAAGCCTCTACTACAGAAGTTAGCAGAGGGCAGGAACACATCTTACTTGGAGAAGCTGGAGCGTGGCTATGAAAATATGGATCATTTTACTGTCAGTTTTGAGCATGAGAGGAGAGCCATCCTTAACATTGACTTTACCAGAGatgatgatgaagctggTGATAATCATGATGAGGAGGATCATGAAGATGAAGTGGTTAATGATGCACGTGTCAGTGGCCGGACTCAGGAGTCCGGATTAAAGACCTCCCCTGTCAAGCAAAGCCCTATCCTGACTCCAGACTCCCTACCAGTTGTGGACAGCGCATCTCAACTGATTACAGGTCCAAGCTCTGCCCAAACACTGGACTCCAGTTCAGCACAAAACACACCACCAACCACTTCCACTCCTGCCCAAACAACCACCACCAGTATATCACAGAATACATCCTCAGTTACACCTACTCCAAGCACAGCCCCCAGCGCACCAGAAAATACAGCCTCAGAGgggtCCACCAACCCCAGTGCAGCAATTACCCCTCAAAGCTCAGATGGTCTTCCACGCCATGTTTTCTCCTTTTCCTGGCTCAATACACCCAAGTAAACTTAAAGTTTCTCCCATATTATGTTTGTTTACCAGCTATTCAGCAGAGACAACATGCCAAGTTCCTTTGtgactttttgtgttttttctaaaGGGACAGTTTACATGGACATGGCATATATGTAAAGCAGATATTTCATTAAGATAAAATTTATTCTGACTCCAGACTCCATTTTAGACTCCAGCAGTGGGACAATGTATTGGTCAACACAGAATAATTCCAAAGATGTAAAATTCACAGTAATTAAATGTGATAACTGCTCAGTAAGGGGTGagtgttaaataaaagaatatgaatata
>XM_026940903.2
GGTCATGCAATCATGACAGCGTAGACGCGTGTGTGCTAAAAACAGAGTGCGCACCGTGGCACCGCGGCACCGCGGGAGGGGGAGGAAGAAACTTCAGCGCATGGGTGACGCATTCCTCACGCAGTGACACGGCActattaacacattttatttcgTTGCCAGAGCTAGGTCGTTGTTGCCGgtgaaagagcaaaaaaagaTACTCGGGCGCATTTCTTTCGGTGTGAGTCACGAGTCTGTCTCTTGAACAATCGCATTCCAGAAACCGCGACACCATGGACAGCCTGGAAAAGCAGCTAATCTGTCCGATCTGCCTCGAGATGTTCACCAAGCCGGTGGTGATCTTACCCTGTCAACACAACCTCTGCCGGAAATGTGCCAATGACATATTTCAGgcctcCAATCCCTATTTGCCAACGCGTGGGGGTTCTACAGTTAGTTCTGGTGGCCGGTTCCGCTGCCCCTCCTGCAGACACGAAGTGGTTCTAGATCGGCATGGTGTTTATGGACTGCAACGGAACCTGCTAGTGGAAAACATAATCGACATGTTCAAACAGGAGACAATCAGtaaaaacaataaagaagaGCCACAGCAGAAACCAGCTGTAATGGCGTGCGAGGTACACGAGGATGAGAAGATTAATATCTATTGTGTGTCCTGTTCTGTTCCCACTTGCTCCCTGTGCAAAGTGTTTGGTGCTCATCAGAACTGTGAAGTTGCACCACTCAGTACTGTCTacgagagccagaagACAGAGTTGTCAGAGGGTGTTGCTATGCTAGTGGGAAACAATGACAGAATTCAGGCCATCATCAGCCTGCTGGAGGAGAGCTGCAGAACAgtggagGAGAATGGGCGCAAGCAGAAATCGCATGTGTGCGAATCATTTGATCACCTGTATGCATTGCTGGAAGATAGGAAAGGAGAGCTGACACTGAAAATCAGCTCTGAACAGCAGGAGAAACTCGATTACATTAAAGGCCTAcagcacagGTACACAGAGCACCTGGACAAGAGTGCAAAGCTGGTAGAGACAGGAATCCAAACCATGGAGGAGCCAGAGATGGCCATCTTCCTGCAGAATGCAAAGCCTCTACTACAGAAGTTAGCAGAGGGCAGGAACACATCTTACTTGGAGAAGCTGGAGCGTGGCTATGAAAATATGGATCATTTTACTGTCAGTTTTGAGCATGAGAGGAGAGCCATCCTTAACATTGACTTTACCAGAGatgatgatgaagctggTGATAATCATGATGAGGAGGATCATGAAGATGAAGTGGTTAATGATGCACGTGTCAGTGGCCGGACTCAGGAGTCCGGATTAAAGACCTCCCCTGTCAAGCAAAGCCCTATCCTGACTCCAGACTCCCTACCAGTTGTGGACAGCGCATCTCAACTGATTACAGgggtCCACCAACCCCAGTGCAGCAATTACCCCTCAAAGCTCAGATGGTCTTCCACGCCATGTTTTCTCCTTTTCCTGGCTCAATACACCCAAGTAAACTTAAAGTTTCTCCCATATTATGTTTGTTTACCAGCTATTCAGCAGAGACAACATGCCAAGTTCCTTTGtgactttttgtgttttttctaaaGGGACAGTTTACATGGACATGGCATATATGTAAAGCAGATATTTCATTAAGATAAAATTTATTCTGACTCCAGACTCCATTTTAGACTCCAGCAGTGGGACAATGTATTGGTCAACACAGAATAATTCCAAAGATGTAAAATTCACAGTAATTAAATGTGATAACTGCTCAGTAAGGGGTGagtgttaaataaaagaatatgaatata
>XM_034314643.1
ttgtagcataATTATTGAGATGTAGGCCTaagtaatgttttataattaatttcttaCAGAAATATCAACAATAACAGGTTAAGTAAATCTTTTCAAAATTCATAACCATAaataatttttgaaattttgcatGAACAGCTTAAGTAAAAAGTGACAGTAAAACTACCACTAAAAGgcctcCAATCCCTATTTGCCAACGCGTGGGGGTTCTACAGTTAGTTCTGGTGGCCGGTTCCGCTGCCCCTCCTGCAGACACGAAGTGGTTCTAGATCGGCATGGTGTTTATGGACTGCAACGGAACCTGCTAGTGGAAAACATAATCGACATGTTCAAACAGGAGACAATCAGtaaaaacaataaagaagaGCCACAGCAGAAACCAGCTGTAATGGCGTGCGAGGTACACGAGGATGAGAAGATTAATATCTATTGTGTGTCCTGTTCTGTTCCCACTTGCTCCCTGTGCAAAGTGTTTGGTGCTCATCAGAACTGTGAAGTTGCACCACTCAGTACTGTCTacgagagccagaagACAGAGTTGTCAGAGGGTGTTGCTATGCTAGTGGGAAACAATGACAGAATTCAGGCCATCATCAGCCTGCTGGAGGAGAGCTGCAGAACAgtggagGAGAATGGGCGCAAGCAGAAATCGCATGTGTGCGAATCATTTGATCACCTGTATGCATTGCTGGAAGATAGGAAAGGAGAGCTGACACTGAAAATCAGCTCTGAACAGCAGGAGAAACTCGATTACATTAAAGGCCTAcagcacagGTACACAGAGCACCTGGACAAGAGTGCAAAGCTGGTAGAGACAGGAATCCAAACCATGGAGGAGCCAGAGATGGCCATCTTCCTGCAGAATGCAAAGCCTCTACTACAGAAGTTAGCAGAGGGCAGGAACACATCTTACTTGGAGAAGCTGGAGCGTGGCTATGAAAATATGGATCATTTTACTGTCAGTTTTGAGCATGAGAGGAGAGCCATCCTTAACATTGACTTTACCAGAGatgatgatgaagctggTGATAATCATGATGAGGAGGATCATGAAGATGAAGTGGTTAATGATGCACGTGTCAGTGGCCGGACTCAGGAGTCCGGATTAAAGACCTCCCCTGTCAAGCAAAGCCCTATCCTGACTCCAGACTCCCTACCAGTTGTGGACAGCGCATCTCAACTGATTACAGGTCCAAGCTCTGCCCAAACACTGGACTCCAGTTCAGCACAAAACACACCACCAACCACTTCCACTCCTGCCCAAACAACCACCACCAGTATATCACAGAATACATCCTCAGTTACACCTACTCCAAGCACAGCCCCCAGCGCACCAGAAAATACAGCCTCAGAGgggtCCACCAACCCCAGTGCAGCAATTACCCCTCAAAGCTCAGATGGTCTTCCACGCCATGTTTTCTCCTTTTCCTGGCTCAATACACCCAAGTAAACTTAAAGTTTCTCCCATATTATGTTTGTTTACCAGCTATTCAGCAGAGACAACATGCCAAGTTCCTTTGtgactttttgtgttttttctaaaGGGACAGTTTACATGGACATGGCATATATGTAAAGCAGATATTTCATTAAGATAAAATTTATTCTGACTCCAGACTCCATTTTAGACTCCAGCAGTGGGACAATGTATTGGTCAACACAGAATAATTCCAAAGATGTAAAATTCACAGTAATTAAATGTGATAACTGCTCAGTAAGGGGTGagtgttaaataaaagaatatgaatata
>XM_034314644.1
gtctgtgtggtccgGTGTTTTTGATATTTGCATACGATTCTTTGGATTCAGTTCCTAAGGATGAACTGAActtgtgaatttttttctgagattcTGGCCGAATtccttggattttcccatggtatcaatGGAAAAAAGGCAGTCTTCAAGgcctcCAATCCCTATTTGCCAACGCGTGGGGGTTCTACAGTTAGTTCTGGTGGCCGGTTCCGCTGCCCCTCCTGCAGACACGAAGTGGTTCTAGATCGGCATGGTGTTTATGGACTGCAACGGAACCTGCTAGTGGAAAACATAATCGACATGTTCAAACAGGAGACAATCAGtaaaaacaataaagaagaGCCACAGCAGAAACCAGCTGTAATGGCGTGCGAGGTACACGAGGATGAGAAGATTAATATCTATTGTGTGTCCTGTTCTGTTCCCACTTGCTCCCTGTGCAAAGTGTTTGGTGCTCATCAGAACTGTGAAGTTGCACCACTCAGTACTGTCTacgagagccagaagACAGAGTTGTCAGAGGGTGTTGCTATGCTAGTGGGAAACAATGACAGAATTCAGGCCATCATCAGCCTGCTGGAGGAGAGCTGCAGAACAgtggagGAGAATGGGCGCAAGCAGAAATCGCATGTGTGCGAATCATTTGATCACCTGTATGCATTGCTGGAAGATAGGAAAGGAGAGCTGACACTGAAAATCAGCTCTGAACAGCAGGAGAAACTCGATTACATTAAAGGCCTAcagcacagGTACACAGAGCACCTGGACAAGAGTGCAAAGCTGGTAGAGACAGGAATCCAAACCATGGAGGAGCCAGAGATGGCCATCTTCCTGCAGAATGCAAAGCCTCTACTACAGAAGTTAGCAGAGGGCAGGAACACATCTTACTTGGAGAAGCTGGAGCGTGGCTATGAAAATATGGATCATTTTACTGTCAGTTTTGAGCATGAGAGGAGAGCCATCCTTAACATTGACTTTACCAGAGatgatgatgaagctggTGATAATCATGATGAGGAGGATCATGAAGATGAAGTGGTTAATGATGCACGTGTCAGTGGCCGGACTCAGGAGTCCGGATTAAAGACCTCCCCTGTCAAGCAAAGCCCTATCCTGACTCCAGACTCCCTACCAGTTGTGGACAGCGCATCTCAACTGATTACAGGTCCAAGCTCTGCCCAAACACTGGACTCCAGTTCAGCACAAAACACACCACCAACCACTTCCACTCCTGCCCAAACAACCACCACCAGTATATCACAGAATACATCCTCAGTTACACCTACTCCAAGCACAGCCCCCAGCGCACCAGAAAATACAGCCTCAGAGgggtCCACCAACCCCAGTGCAGCAATTACCCCTCAAAGCTCAGATGGTCTTCCACGCCATGTTTTCTCCTTTTCCTGGCTCAATACACCCAAGTAAACTTAAAGTTTCTCCCATATTATGTTTGTTTACCAGCTATTCAGCAGAGACAACATGCCAAGTTCCTTTGtgactttttgtgttttttctaaaGGGACAGTTTACATGGACATGGCATATATGTAAAGCAGATATTTCATTAAGATAAAATTTATTCTGACTCCAGACTCCATTTTAGACTCCAGCAGTGGGACAATGTATTGGTCAACACAGAATAATTCCAAAGATGTAAAATTCACAGTAATTAAATGTGATAACTGCTCAGTAAGGGGTGagtgttaaataaaagaatatgaatata

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10654 TRIM55, MURF2; tripartite motif-containing protein 55

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940902.2 True 1965 mRNA 0.47 10 8505221 8531442
XM_026940903.2 False 1807 mRNA 0.47 10 8505221 8531448
XM_034314643.1 False 1751 mRNA 0.44 10 8505221 8552008
XM_034314644.1 False 1726 mRNA 0.45 10 8505221 8550850

Neighbor

gene id symbol gene type direction distance location
basp1 LOC108280584 coding downstream 325120 8155454 ~ 8180101 (-)
efr3a efr3a coding downstream 467419 7976891 ~ 8037802 (-)
LOC117595746 NA coding downstream 646607 7858496 ~ 7858614 (-)
LOC117595745 NA coding downstream 648691 7856412 ~ 7856530 (-)
LOC117595744 NA coding downstream 650773 7854330 ~ 7854448 (-)
si:dkey-7l6.3 LOC108280163 coding upstream 126811 8678819 ~ 8687931 (-)
tmem71 tmem71 coding upstream 138044 8690052 ~ 8714258 (-)
ift57 ift57,LOC108280285 coding upstream 174313 8726321 ~ 8758028 (-)
epc1b LOC108280341,LOC108442943 coding upstream 864181 9416189 ~ 9486194 (-)
zeb1a LOC108280338 coding upstream 1099567 9651575 ~ 9685427 (-)
G316963 NA non-coding downstream 20038 8483587 ~ 8485183 (-)
LOC113543136 NA non-coding downstream 66871 8432827 ~ 8438350 (-)
G316905 NA non-coding downstream 69653 8433181 ~ 8435568 (-)
G316792 NA non-coding downstream 243544 8259254 ~ 8261677 (-)
LOC117595728 NA non-coding downstream 373359 8125054 ~ 8131862 (-)
G317010 NA non-coding upstream 36765 8588773 ~ 8589088 (-)
G317062 NA non-coding upstream 45864 8597872 ~ 8598077 (-)
G317076 NA non-coding upstream 111512 8663520 ~ 8663729 (-)
G317059 NA non-coding upstream 125181 8677189 ~ 8678088 (-)
G317123 NA non-coding upstream 248274 8800282 ~ 8800516 (-)
vcpip1 vcpip1 other downstream 16592 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 937087 7565081 ~ 7568134 (-)
limk1a limk1,LOC107663742 other downstream 1855826 6593269 ~ 6649395 (-)
trnat-agu_16 NA other downstream 3283386 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 3284205 5220943 ~ 5221016 (-)
G317176 NA other upstream 331641 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 351816 8903824 ~ 8954110 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other upstream 417196 8969204 ~ 8973275 (-)
ccl20a.3 LOC108261059 other upstream 1975274 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 3067868 11619876 ~ 11705877 (-)

Expression


Co-expression Network