prpf38b (prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982)


Basic Information

Item Value
gene id prpf38b
gene name prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9874783 ~ 9894767 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925427.2
TTGCGAAGCGTAATTTCCGTTTCCGCCTTGTCTCCGGTAATATTAGCTATCTTGTTTTGCGCCTAACTGACCCAGTGTTACTGAAAACATCGTTTGTTCGGACAAATACCGTTTTAATACCTCAACAAATTGAGTTTAATAGCGTATAACACTcgttttttaatgacatttgaaGCAAAGCTAGTTTTAATGACACTATAGTTAGTACTAAAATTGGTTGTGTAAAGCAACTAGCTAAGCAGCTAGCCCCTAATTTTCTGTGCCGCAGCTAGGCGCTATGGCGGGGAAtccgcagcagcagcaggccgTGAGCAAACCTCCTTCAGGGAAACACGGCAACGTTTTACCTCTGTGGGGCAATGAGAAGACAATGAACCTAAACCCTATGATTCTCACAAATGTGTTATCATCTCCGTATTTCAAGGTTCAGTTGTATGAGCTGAAGACCTACCATGAGGTCGTGGACGAGATCTACTTCAAGGTAACCCATGTGGAGCCGTGGGAGAAAGGCAGCAGGAAAACAGCAGGGCAGACTGGAATGTGCGGAGGGGTGCGAGGTGTAGGCACAGGTGGTATCGTCTCCACAGCTTTCTGTCTACTGTATAAGCTGTTCACGCTAAAACTGACCCGCAAACAGGTGATGggtctcattacacacacagactcccCGTACATCCGAGCACTTGGCTTCATGTATATACGATACACACAACCCCCTGCAGACCTGATCGAGTGGTTTGAGCCCTTCCTTGATGATGAGGAGGAGCTGGATGTGAAGGCTGGCGGTGGGTGTGTGATGACTATCGGTGAGATGCTGCGCTCCTTCCTCACAAAGCTTGAATGGTTCTCCACACTGTTTCCACGTATCCCAGTGCCTGTTCAGAAGACCATCGACCAGCAGATGAAAAACCGACCACGCAAACCACCACAGAAAGAGGGcaaagaggatgaggaggaaggcGACTGGCACCGATCAAGGTCCCCGAGGAAAACACCGAGCCCTCGGAGATCCCCACACCGCTCACGCAGCCGCAGTCACCACCGAGAACGGCGTGGCGCCAGCTTCGACCGCGAgctcgagagagagagggatcgCCAACGCAaagacagggacagggacagagacagggaaAGGGACagagtggagagagacagggttgcagacagggacagagatcGAGAGAGGGATCGACGGCATTCCCGTACCCCAGATCAAGCCTCAGACTGGCGAAGGAGCCGCGAACAGAGGAATGAGAgaaaagagcgagagaaagagcgGGAtggagagagcgaaagagagcgAAGCCGTCGGAAGGAGCGAGAGCACAAAGAACGCACCAGTGGCGGAGAGCGAGAAAGGGAGCGCTCAAAAGATAAGAGGGCCAAAGGAGAAGGAGATGAACGGCGTCACAAGGATGAGCGAGAGGAGAGGAGGCACAGGGAGGAGCGTAAGAGCAAGCGATCAAGCCAAAGCCGGAGTAGAGAGAGGAGGCACAAAGCTGAGCGCTCAAGCAGGAAGTGTTCTCGGTCACGCTCCACGAGTCGTCAGGAACCAGAGGAGAAGAGCAAGAAGCGTGAGTGCAGCAACAACAAGGAGCATATGCACAAACACAGTCACAGTCGAGAACGCAGTCACCGCAGAGATGCAAGCAACGGGAAAGAACATGTCAGAATGGACATTGAAGGGACTCCCTGAGCTTACTTTCCTCACACTTGTCTTTTCTGTCTTGTCTTGGGACCTTCTCATGCACCCCGACCTTTGTTCTACTAAGTTACTTGGTGTAGATCTCATGCAACCTTTTTTGTTCCATTACACTTTAAGCCATTATGGACATAAAaggaaaaatgctttttaaatatttcttttgttttgaggAAACCTTCTAGAATATTTGTACATATAATTCTGGAGAATGTTTTAAATCATACAGATGAACATGTGCTGAGTGAAACTGGCAGCATGGCAACAGCATAAACCTGCTGAAATTGTGCTGTGTTGCATTTTGTTTCTTAATAAAAATCTTGTATGAaaaga
>XM_034314774.1
GAGGAGCACGCTGACTTTAGGTAACCCATGTGGAGCCGTGGGAGAAAGGCAGCAGGAAAACAGCAGGGCAGACTGGAATGTGCGGAGGGGTGCGAGGTGTAGGCACAGGTGGTATCGTCTCCACAGCTTTCTGTCTACTGTATAAGCTGTTCACGCTAAAACTGACCCGCAAACAGGTGATGggtctcattacacacacagactcccCGTACATCCGAGCACTTGGCTTCATGTATATACGATACACACAACCCCCTGCAGACCTGATCGAGTGGTTTGAGCCCTTCCTTGATGATGAGGAGGAGCTGGATGTGAAGGCTGGCGGTGGGTGTGTGATGACTATCGGTGAGATGCTGCGCTCCTTCCTCACAAAGCTTGAATGGTTCTCCACACTGTTTCCACGTATCCCAGTGCCTGTTCAGAAGACCATCGACCAGCAGATGAAAAACCGACCACGCAAACCACCACAGAAAGAGGGcaaagaggatgaggaggaaggcGACTGGCACCGATCAAGGTCCCCGAGGAAAACACCGAGCCCTCGGAGATCCCCACACCGCTCACGCAGCCGCAGTCACCACCGAGAACGGCGTGGCGCCAGCTTCGACCGCGAgctcgagagagagagggatcgCCAACGCAaagacagggacagggacagagacagggaaAGGGACagagtggagagagacagggttgcagacagggacagagatcGAGAGAGGGATCGACGGCATTCCCGTACCCCAGATCAAGCCTCAGACTGGCGAAGGAGCCGCGAACAGAGGAATGAGAgaaaagagcgagagaaagagcgGGAtggagagagcgaaagagagcgAAGCCGTCGGAAGGAGCGAGAGCACAAAGAACGCACCAGTGGCGGAGAGCGAGAAAGGGAGCGCTCAAAAGATAAGAGGGCCAAAGGAGAAGGAGATGAACGGCGTCACAAGGATGAGCGAGAGGAGAGGAGGCACAGGGAGGAGCGTAAGAGCAAGCGATCAAGCCAAAGCCGGAGTAGAGAGAGGAGGCACAAAGCTGAGCGCTCAAGCAGGAAGTGTTCTCGGTCACGCTCCACGAGTCGTCAGGAACCAGAGGAGAAGAGCAAGAAGCGTGAGTGCAGCAACAACAAGGAGCATATGCACAAACACAGTCACAGTCGAGAACGCAGTCACCGCAGAGATGCAAGCAACGGGAAAGAACATGTCAGAATGGACATTGAAGGGACTCCCTGAGCTTACTTTCCTCACACTTGTCTTTTCTGTCTTGTCTTGGGACCTTCTCATGCACCCCGACCTTTGTTCTACTAAGTTACTTGGTGTAGATCTCATGCAACCTTTTTTGTTCCATTACACTTTAAGCCATTATGGACATAAAaggaaaaatgctttttaaatatttcttttgttttgaggAAACCTTCTAGAATATTTGTACATATAATTCTGGAGAATGTTTTAAATCATACAGATGAACATGTGCTGAGTGAAACTGGCAGCATGGCAACAGCATAAACCTGCTGAAATTGTGCTGTGTTGCATTTTGTTTCTTAATAAAAATCTTGTATGAaaaga

Function

symbol description
prpf38b Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Orthologous to human PRPF38B (pre-mRNA processing factor 38B).

NR:

description
pre-mRNA-splicing factor 38B-like

GO: NA

KEGG:

id description
K12850 PRPF38B; pre-mRNA-splicing factor 38B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925427.2 True 2035 mRNA 0.49 6 9874783 9894767
XM_034314774.1 False 1574 mRNA 0.51 6 9874783 9894126

Neighbor

gene id symbol gene type direction distance location
LOC113533399 LOC108280347 coding downstream 86130 9715945 ~ 9788653 (-)
zeb1a LOC108280338 coding downstream 189356 9651575 ~ 9685427 (-)
epc1b LOC108280341,LOC108442943 coding downstream 388589 9416189 ~ 9486194 (-)
ift57 ift57,LOC108280285 coding downstream 1116755 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 1160525 8690052 ~ 8714258 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 40456 9935223 ~ 9942312 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding upstream 453074 10347841 ~ 10392507 (-)
camsap2b LOC108261060,LOC108428284 coding upstream 499116 10393883 ~ 10460626 (-)
LOC113533548 NA coding upstream 675418 10570185 ~ 10584166 (-)
chrng LOC108428254 coding upstream 689751 10584518 ~ 10596849 (-)
G317591 NA non-coding downstream 47741 9826815 ~ 9827042 (-)
G317588 NA non-coding downstream 52641 9821929 ~ 9822142 (-)
G317581 NA non-coding downstream 65368 9809202 ~ 9809415 (-)
G317580 NA non-coding downstream 66020 9808562 ~ 9808763 (-)
G317570 NA non-coding downstream 76723 9797830 ~ 9798060 (-)
LOC117599942 NA non-coding upstream 9379 9904146 ~ 9944556 (-)
G317656 NA non-coding upstream 62778 9957545 ~ 9958446 (-)
G317664 NA non-coding upstream 86230 9980997 ~ 9981262 (-)
G317669 LOC100537796 non-coding upstream 92035 9986802 ~ 9990215 (-)
G317685 NA non-coding upstream 112885 10007652 ~ 10009267 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 901508 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 920673 8903824 ~ 8954110 (-)
G317176 NA other downstream 989074 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 1386154 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 2306649 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 632515 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 1725109 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 3013686 12908453 ~ 12928071 (-)
ccl25a NA other upstream 3717749 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 3770414 13665181 ~ 13680110 (-)

Expression


Co-expression Network