G317685


Basic Information

Item Value
gene id G317685
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10007652 ~ 10009267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376237
TCTTCCTCAATCTTCTCAAAGGTTCGCGCAACAGCCAGATATGGAACTCTCTGCCTCTTCCTCCAGCAAGCATCATCAATGGGATGGTAGTGAGCTTTAGAAGGATCATATTGGCTCTGGTTTGCAGGTTCTACATCCTTCTCAcacttcttttctttctcctcagAAGTAGTAGCAGCCGCAGGCTTCTCGCCATCCTTCTTCTCTACATTACTTTTCTCTTCTGATTTTTCCAGCTTCATTGCAGCTTTTCTGGGTGCAAAAAAACTGTTGATGGCTTTTTTCTTAGCAGATCCCTCTATCTTCTCCTCTTCTACATCCTTCAATTTCTTCATCACTCTTTCAGGACTGCATTTTTCCTCCTTCGTTACCTTTTTCATTCCTTTATTGTTCCCATTCACTTCATACTTCTCTCCTTCCTGTTCAGTTTCCTTTTCatcactttgttttttattctctttttcagCATTAGTCACATTCATGTTTCCCTGATCCTTTGCTTTCAGTAGTTCTTTCTCCACagtatttctgttattttgctCCACCTCCATAGCCTCTTCATCAATTCCCATCTTTTCAGGAGATCCTTCTATTCTTGCTCGTTTACTCTCCtgtcctccctctgtctcttttccttcctcctctttttctcGCTCTTCATCACTCCTGCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376237 True 672 lncRNA 0.42 5 10007652 10009267

Neighbor

gene id symbol gene type direction distance location
LOC117599941 LOC107739197,LOC107573659 coding downstream 65340 9935223 ~ 9942312 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding downstream 112885 9874783 ~ 9894767 (-)
LOC113533399 LOC108280347 coding downstream 218999 9715945 ~ 9788653 (-)
zeb1a LOC108280338 coding downstream 322225 9651575 ~ 9685427 (-)
epc1b LOC108280341,LOC108442943 coding downstream 521458 9416189 ~ 9486194 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding upstream 338574 10347841 ~ 10392507 (-)
camsap2b LOC108261060,LOC108428284 coding upstream 384616 10393883 ~ 10460626 (-)
LOC113533548 NA coding upstream 560918 10570185 ~ 10584166 (-)
chrng LOC108428254 coding upstream 575251 10584518 ~ 10596849 (-)
LOC113533461 prss56 coding upstream 592431 10601698 ~ 10607930 (-)
G317669 LOC100537796 non-coding downstream 17437 9986802 ~ 9990215 (-)
G317664 NA non-coding downstream 26390 9980997 ~ 9981262 (-)
G317656 NA non-coding downstream 49206 9957545 ~ 9958446 (-)
LOC117599942 NA non-coding downstream 63096 9904146 ~ 9944556 (-)
G317591 NA non-coding downstream 180610 9826815 ~ 9827042 (-)
LOC113533396 NA non-coding upstream 6196 10015463 ~ 10018527 (-)
G317726 NA non-coding upstream 112724 10121991 ~ 10123329 (-)
G317736 NA non-coding upstream 127955 10137222 ~ 10137460 (-)
G317741 NA non-coding upstream 132201 10141468 ~ 10141670 (-)
G317826 NA non-coding upstream 166424 10175691 ~ 10179304 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 1034377 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 1053542 8903824 ~ 8954110 (-)
G317176 NA other downstream 1121943 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 1519023 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 2439518 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 518015 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 1610609 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 2899186 12908453 ~ 12928071 (-)
ccl25a NA other upstream 3603249 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 3655914 13665181 ~ 13680110 (-)

Expression


Co-expression Network