LOC113543184 (vmhcl,LOC108280896,LOC108428347,LOC102294892,LOC102200768,LOC101484004)


Basic Information

Item Value
gene id LOC113543184
gene name vmhcl,LOC108280896,LOC108428347,LOC102294892,LOC102200768,LOC101484004
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7762368 ~ 7784373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941255.2
CTCAGCTCTTGCCCAGTTGTTAGTGCAATAAACTACAGCTGTTGCACCTGCTATTGTcTTTATGAACAAACCTCTGGAATTTTAACCATTCTCTGTATCCAGTAAGGCATAAATCAAATAAGTATGGCGGATgctgagatgtcagtgttcgGGGTGGCAGGCCCTTACCTGCGGAAGTCTGAAAAGGAACGTTTAGAGGCACAGACTCGTCTTTTTGACATGAAGAAAGAATGTTTTGTGCCTGATCCTGTGGAGGAGTTTGTTAAGGCCACAATTACCAGTCGCGATGgagataaagtgacagtagagACTGAATCAGGGAAGacattgACTGTTAAGGACAGCCAGGTTCTGCAACAAAATCCTCCAAAGTTTGACAAAATTGAAGACATGGCCATGCTGACTTTCCTACATGAGCCCGCTGTGCTGTATAATCTCAAAGAGCGTTATGCTGCTTGGATGATCTATACCTATTCAGGGCTGTTCTGTGTCACTGTCAACCCCTACAAGTGGCTGCCAGTGTATAATCACGAAGTGGTTCTAGCTTATAGGGGCAAGAAGAGGAGTGAAGCACCTCctcacattttctccatttctgaTAATGCATACCAGTATATGTTGGCAGACCGTGAAAACCAGTCACTCCTGATCACgGGAGAATCTGGTGCTGGGAAAACTGTAAACACCAAAAGAGTCATTCAGTACTTTGCCAGTATTGCAGCAAGTGGGACAAAGAAGGACTCAAACAAGGGAACTTTGGAAGATCAAATCATCCAGGCTAACCCTGCGCTGGAGGCTTTTGGCAATGCCAAGACTATTAGAAATGATAATTCGTCAAGATTTggCAAATTCATCAGAATTCATTTCGACACCAGAGGGAAACTGGCATCAGCTGACATTGAAACATATCTGCTGGAGAAATCTCGTGTGATATTTCAACTCAAGGCGGAGAGAGATTATCACATATTCTATCAAATCTTGTCAAACAAGAAACCAGAGATACTTGAGATGCTACTGGTGACACAAAACCCCTATGACTATGCATTCATCTCTCAGGGAGAAACCACAGTTCCTTCCATTGATGACGCTGAAGAGTTAATGGCAACTGATAATGCTTTTGATGTACTTGGTTTCacacaagaggaaaaaaactcaGTGTACAAGCTTACTGGAGCCATTATGCattatggtaacatgaaattcAAGCAAAAGCAGCGTGAAGAGCAGGCAGAAGCTGATGGAACTGAGGatgcaGACAAAGCTGCTTATCTGATGGGCCTGAACTCTGCTGACCTCATAAAAGGTTTGTGTCACCCAAGAGTTAAAGTAGGCAATGAGTGGGTGACCAAAGGACAAAATGTCCAACAGGTGAACTATGCCGTTGGTGCTCTGTCCAAAGCAGTGTATGAGAAAATGTTCCTCTGGATGGTGGTGAGAATCAACCAGTCTCTGGAAACAAGGCAGCCACGCCAGTATTTCATTGGTGTATTGGATATTGCTGGTTTTGAGATTTTTGAAtttaacaCTTTCGAGCAACTCTgtattaattttacaaatgaGAAACTGCAACAGTTTTTCAACCATCACATGTTTGTGCTGGAACAAGAAGAGTACAAGAAAGAAGGCATAGAGTGGGAATTCATTGACTTTGGCATGGACTTGCAAGCCTGCATTGATTTGATTGAGAAGCCCATGGGTATCATGTCTATTCTTGAAGAGGAATGCATGTTCCCCAAAGCCACAGATGCTACCTTTAAAGCAAAGCTTTATGACAACCATTTGGGAAAATCAAGTAACTTCCAGAAGCCAAGGATTGTAAAGGGGAAGCCCGAGGCTCACTTTGCCCTTGTTCACTATGCAGGCACTGTGGACTACAACATCAACAACTGGCTCATAAAGAACAAGGATCCACTAAATGAAACTGTAGTAGGACTCTACCAAAAATCTTCACTGAAACTGCTGGCTTTCCTGTTTGCAAACTATGCTGGGGCAGATTCAGcaaTGGCTGATTctggcaaaaaagaaaagaagaagaaaggatcATCTTTCCAGACAGTGTCTGCGCTTCATAGGGAAAATCTTAATAAGCTAATGACAAACTTGCGCTCAACTCATCCACACTTTGTACGCTGCATCATTCCCAATGAGACCAAGACTCCTGGTGCCATGAACAACCCCCTTGTTATGCATCAGCTTCGCTGCAATGGTGTGCTAGAGGGTATCAGGATCTGCAGGAAGGGTTTCCCAAACAGAATCCTTTATGGTGATTTCAAACAGAGGTACCGCATCCTTAACCCCTCCGCAATCCCAGAGGGACAGTTCATTGACAGCAAGAAGGGGGCTGAAAAACTGTTGGGTTCACTTGATATAGATATCCAACAGTACAGATTTGGGCACACTAAGGTGTTTTTCAAAGCTGGCCTGTTAGGTCAGTTGGAAGAAATGCGAGACGAAAGGCtatctaaaatattaacagGAATCCAAGCCAGGTCTCGTGGGCTTCTCTCAAGAATTGAGTACCAGAAGATGGTGGAACGCAGGGATGCCTTGCTTGTTATACAGTGGAATGTACGTTCATTTATGAGTGTCAAAAACTGGCCATGGATGAAGCTGTATTTCAAGATCAAACCATTACTGAGATCTGCAgaagcagagaaagagatggcCAACATGAAAGAGGAATTCCTGAAACTCAAGGAGGCTTATGCCAAGTCTGAAGCTCGAAGAAAAGAGCTTGAGGAGAAAATGGTCTCACTTCTCCAAGAGAAAAATGATCTGCAGCTTCAAGTGCAGGCGGAACAAGACAATCTGTGTGATGCTGAGGAAAGGTGTGAAGGGCTAATTAAAAACAAGATCCAGATGGAAGCCAAAGTCAAAGAGCTAAATGAAAGAttggaggatgaggaagagatGAATGCAGAGCTAACAGCTAAAAAGAGAAAACTGGAGGATGAGTGCTCTGAGCTCAAGAAAGACATTGATGATCTTGAGTTGACTCTGGCTAAAGTGGAAAAGGAGAAGCATGCCACAGAGAATAAGGTGAAGAATCTGACTGAGGAAATGGCAGCTCTGGATGAAATCATAGCTAAGTTAACTAAGGAGAAGAAAGCCCTGCAAGAGGCTCATCAGCAAACCCTGGATGACCTCCAGAGTGAGGAGGACAAAGTCAACACCCTCACCAAAATCAAAGTCAAACTAGAGCAGCAAGTTGATGATTTAGAGGGGTCTCTAGAGCAAGAAAAGAAGATTCGTATGGATCTTGAAAGGGCAAAGAGAAAGCTGGAGGGTGACTTAAAATTAACCCAAGAAAGCATAATGGACCTGGAAAATGACAAACAGCAACTAGAGGAACGCCTTAAGAAGAAAGATTTTGAAATCAGCCAGCTGAATAGTAAAATTGAGGATGAGCAAGTCATCATTGGGCAACTCCAAAAGAAAATTAAGGAGTTGCAGgCTCGAGTAGAAGAACTGGAGGAAGAGCTTGAGGCCGAAAGAGCTGCCAGAGCCAAGGTGGAGAAACAGAGGGCAGATTTGGCGAGAGAACTGGAGGAAATAAGTGAGAGACTGGAAGAGGCTGGAGGAGCTACTGCCGTTCAGattgaaatgaacaaaaaaagggAGGCCGAGTTTCAGAAACTGCGCAGAGACCTTGAAGAGGCAACTCTGCACCATGAAGCCATAGCTGCCACACTTAGAAAGAAACAAGCTGATAGTGTGGCTGAACTGGGTGAGCAGATAGATAACCTGCAGAGGGTCAAACAAAAattagagaaagagaagagtgaGCTTAAACTGGAGCTGGACGATGTGGTCTCCAGCATGGAACAAATTGTCAAGTCCAAAACTTACCtagagaaaatgagcaggactTTGGAGGACCAGATGAATGAATTCCGAAACAAGTGTGAGGAAAACCAAAGGTCCATCAATGATTTTGTAACTCAGAAGGCAAAGCTTCAGACGGAGAATGATGAGCTTTCAAGACAGGTAGAAGAAAAGGAGTCACTAATCTTTCAGCTTACAAAGGGAAAACAGTCCTACTCTCAACAGCTTGATGATCTAAAAAGGCAGCTTGAAGAGGAGATTAAGGCCAAGAATGCCCTTGCCCATGCAGTACAGTCTGCTCGTCATGATTCAGATCTACTCAGAGAACAGTatgaggaggagcaggaggcaAAAGCAGAGCTGCAGCGTAGTCTCACTAAGGCTAATGCTGAGGTTGCTCAATGGAGAACCAAGTATGAAACTGATGCCATCCAGAGGACAGAAGAACTGGAAGAAGCCAAaaAGAAACTTGCTCAGCGTTTGCAGGATGCAGAAGAGGCTGTGGAAGCAGTTAATGCTAAATGTTCCTCTCTTGAGAAGACCAAACACCGACTTCAGAATGAAATTGAAGACCTCATGGTGGATATGGAGCGATCAAATGCAGCTGCTGCAGCCTTGGACAAGAaacaaaggaattttgataagGTCCTTGCTGAGTGGAAGCAGAAATATGAGGAGTCTCAGTGTGAACTTGAAAGCTCCCAGAAGGAAGCCCGATCTCTGAGCACCGAGCTCTTCAAGTTAAAGAATTCATACGAGGAATCTTTAGATCACCTGGAGACTTTGAAGAGGGAGAATAAGATTCTCCAAGagGAGATAACTGATCTAACTGAACAACTCAGTGAAGGTGGAAAGACAATCCATGAATTAGAGAAGTCCCGTAAACAGCTAGAGCAAGAAAAAACAGACATCCAATCTGCACTGGAGGAGGCAGAGGGCTCCTTAGAGCATGAAGAGGGTAAAATACTAAGAAGTCAGTTGGAACTCAACCAGATAAAGGCTGAAAATGAACGTAAATTGGCTGAAAAAGATGAGGAAATGGAGCAGATAAAGAGAAACTTGCAGAGGACAATTGACACCCTGCAAAGCTCTTTGGAGGCAGAGACTCGTAGCAGGAATGAAGCTCTTAGAGTAAAGAAGAAAATGGAGGGGGATCTTAATGAGATGGAGATCCAACTAAGTCAGGCCAATAGACAGGCCGCAGAGGCTCAAAAGCAGCTCAAGATAATTCAATCTAACCTCAAGGACTGCCAGATCCAGTTGGATGATGTTGTTCATGCCAATGATGATCTGAAGGAGAATACTGCCATTGTAGAGAGACGTAATGTTCTGCTACAGGCAGAAATTGAGGAGCTCCGGAATGTACTAGAGCAAACGGAGAGAGGACGCAAGCTTGCAGAACAGGAACTACTAGATGTCAGTGAGAGAGTTCAGCTTCTGCATTCACAGAATACTAGCCTCCTgaaccaaaagaaaaaacaagaagctGACATATCCCAGCTTCAAAGTGAAGTCGAAGATTCATTACAAGAGTGCAGGAATGCTGAGGAAAAAGCGAAAAAGGCCATCACTGATGCTGCCATGATGGCAGAGGAACTGAAGAAAGAGCAGGATACCAGTGCCCATCTGGAGCGGATGAAAAAGAACATGGAACAAACAATTAAAGACCTCCAGCACCGCTTGAATGAAGCAGAGCAAATTGCCATGAAAGGTGGCAAGAAACAAGTGCAGAAGCTGGAGGCCAGGGTAAGAGATTTGGAGAATGAACTTGAAGCAGAGCAGAAAAGAAGCAGTGAAACTGTGAAGGGAATTCGCAAATATGAACGTCGCATTAAAGAACTTTCCTACCAGTCTGAAGAGGACCACAAGAACATAGCCCGTCTTCAAGATCTGGTGGATAAGCTGCAACTTAAAGTTAAGGCTTACAAGCGATCTGCTGAAGATGCTGAAGAACAGGCCAATGTTCATCTTGGAAAATTCCGCAAACTGCAGCATGAGCTGGATGAAGCAGTGGAGAGGGCTGACGTTGCTGAGTCCCAGGTCAACAAACTACGTGCAAAGAGCCGTGAACCTGGGTCAAAGaaagGATTTGATGAAGAGTAAAGCTCTGGACATCCTCTGAGACCATATGCACCCTCTCCTGCACTGTCCAGCATCACTAAATAAAGTCACTCAATGCACTCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17751 MYH6_7; myosin heavy chain 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941255.2 True 6011 mRNA 0.44 39 7762368 7784373

Neighbor

gene id symbol gene type direction distance location
mrpl34 mrpl34 coding downstream 2819 7757845 ~ 7759549 (-)
rpp40 rpp40 coding downstream 120055 7636571 ~ 7642313 (-)
cdyl cdyl coding downstream 134063 7613113 ~ 7628305 (-)
mrps22 mrps22 coding downstream 249418 7506443 ~ 7512950 (-)
get1 wrb,LOC108280886,LOC107730994 coding downstream 302531 7453778 ~ 7459837 (-)
pik3cb pik3cb,LOC107726123 coding upstream 19763 7804136 ~ 7837149 (-)
LOC117595747 NA coding upstream 57529 7841902 ~ 7842020 (-)
LOC117595743 NA coding upstream 59617 7843990 ~ 7844108 (-)
LOC117595749 NA coding upstream 61679 7846052 ~ 7846170 (-)
LOC117595751 NA coding upstream 63762 7848135 ~ 7848253 (-)
G316437 NA non-coding downstream 5430 7756067 ~ 7756938 (-)
G316421 NA non-coding downstream 32632 7703669 ~ 7729736 (-)
G316409 NA non-coding downstream 72466 7689492 ~ 7689902 (-)
G316394 NA non-coding downstream 93366 7668756 ~ 7669002 (-)
G316377 NA non-coding downstream 154713 7606224 ~ 7607655 (-)
LOC117599994 NA non-coding upstream 11327 7795700 ~ 7800165 (-)
LOC117595728 NA non-coding upstream 340681 8125054 ~ 8131862 (-)
G316792 NA non-coding upstream 474881 8259254 ~ 8261677 (-)
LOC113543136 NA non-coding upstream 648454 8432827 ~ 8438350 (-)
G316905 NA non-coding upstream 648808 8433181 ~ 8435568 (-)
rps28 rps28 other downstream 194234 7565081 ~ 7568134 (-)
limk1a limk1,LOC107663742 other downstream 1112973 6593269 ~ 6649395 (-)
trnat-agu_16 NA other downstream 2540533 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 2541352 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 2541834 5220461 ~ 5220534 (-)
vcpip1 vcpip1 other upstream 692850 8477223 ~ 8488629 (-)
G317176 NA other upstream 1099276 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 1119451 8903824 ~ 8954110 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other upstream 1184831 8969204 ~ 8973275 (-)
ccl20a.3 LOC108261059 other upstream 2742909 10527282 ~ 10528279 (-)

Expression


Co-expression Network