G316394


Basic Information

Item Value
gene id G316394
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7668756 ~ 7669002 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU374727
tctcatcggttgagttcgctcgctgctgctgggggcggccccatatggactgcctgaagaactgtttggattgctggggatggcgccacctgggggctgtggagatggcatggggatcacatatggggagctgtactgtaatggcttgggactgcgattgctgtagtggctttggggctgcagttgccacgagcagcttcgtactcaggactccatcagtggacagtggatagattttaaccagccg

Function

GO: NA

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis

RNA

RNA id representative length rna type GC content exon number start site end site
TU374727 True 247 lncRNA 0.57 1 7668756 7669002

Neighbor

gene id symbol gene type direction distance location
rpp40 rpp40 coding downstream 26443 7636571 ~ 7642313 (-)
cdyl cdyl coding downstream 40451 7613113 ~ 7628305 (-)
mrps22 mrps22 coding downstream 155806 7506443 ~ 7512950 (-)
get1 wrb,LOC108280886,LOC107730994 coding downstream 208919 7453778 ~ 7459837 (-)
sh3bgr LOC108280172,LOC108410487 coding downstream 228255 7424189 ~ 7440501 (-)
mrpl34 mrpl34 coding upstream 88843 7757845 ~ 7759549 (-)
LOC113543184 vmhcl,LOC108280896,LOC108428347,LOC102294892,LOC102200768,LOC101484004 coding upstream 93366 7762368 ~ 7784373 (-)
pik3cb pik3cb,LOC107726123 coding upstream 135134 7804136 ~ 7837149 (-)
LOC117595747 NA coding upstream 172900 7841902 ~ 7842020 (-)
LOC117595743 NA coding upstream 174988 7843990 ~ 7844108 (-)
G316377 NA non-coding downstream 61101 7606224 ~ 7607655 (-)
LOC117600000 NA non-coding downstream 98285 7569233 ~ 7570471 (-)
G316318 ret2,rbp2,LOC103044214,LOC108410483,LOC108239352,LOC107567571,LOC106613114 non-coding downstream 164027 7500415 ~ 7504729 (-)
G316311 LOC108280674 non-coding downstream 174385 7492416 ~ 7494371 (-)
G316303 NA non-coding downstream 205879 7462514 ~ 7462877 (-)
G316409 NA non-coding upstream 20490 7689492 ~ 7689902 (-)
G316421 NA non-coding upstream 34667 7703669 ~ 7729736 (-)
G316437 NA non-coding upstream 87065 7756067 ~ 7756938 (-)
LOC117599994 NA non-coding upstream 126698 7795700 ~ 7800165 (-)
LOC117595728 NA non-coding upstream 456052 8125054 ~ 8131862 (-)
rps28 rps28 other downstream 100622 7565081 ~ 7568134 (-)
limk1a limk1,LOC107663742 other downstream 1019361 6593269 ~ 6649395 (-)
trnat-agu_16 NA other downstream 2446921 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 2447740 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 2448222 5220461 ~ 5220534 (-)
vcpip1 vcpip1 other upstream 808221 8477223 ~ 8488629 (-)
G317176 NA other upstream 1214647 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 1234822 8903824 ~ 8954110 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other upstream 1300202 8969204 ~ 8973275 (-)
ccl20a.3 LOC108261059 other upstream 2858280 10527282 ~ 10528279 (-)

Expression


Co-expression Network