G316303


Basic Information

Item Value
gene id G316303
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7462514 ~ 7462877 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU374612
tccacaagagaaaataatagctgaatttataaaaatgaccccgttcaaaagtttacatctccttgattcttaatactgtgttgttacctgaatgatccacagctgtgtttttttgtttagtgatagttgttcatgagtcccttgtttgtcctgaacagttaaactgcctgctgttcttcagaaaaatccttcaggtcccacaaattctttggttttccagcatttttgtgtatttgaaccctttccaacaatgactgtatgattttgagatccatcttttcacactgaggacaactgagggactcatatgcaactattacagaaggttcaaacgctcactgatgctccagaaggaaaaaccatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU374612 True 364 lncRNA 0.38 1 7462514 7462877

Neighbor

gene id symbol gene type direction distance location
get1 wrb,LOC108280886,LOC107730994 coding downstream 2677 7453778 ~ 7459837 (-)
sh3bgr LOC108280172,LOC108410487 coding downstream 22013 7424189 ~ 7440501 (-)
bace2 LOC108280663 coding downstream 228014 7207427 ~ 7234500 (-)
nop53 gltscr2 coding downstream 317407 7129376 ~ 7145107 (-)
LOC113543395 LOC108280251,LOC108443093,LOC103038690,LOC107567262,LOC107655289,LOC100331216,LOC107677092,LOC107741519 coding downstream 341816 7090842 ~ 7120698 (-)
mrps22 mrps22 coding upstream 43566 7506443 ~ 7512950 (-)
cdyl cdyl coding upstream 150236 7613113 ~ 7628305 (-)
rpp40 rpp40 coding upstream 173694 7636571 ~ 7642313 (-)
mrpl34 mrpl34 coding upstream 294968 7757845 ~ 7759549 (-)
LOC113543184 vmhcl,LOC108280896,LOC108428347,LOC102294892,LOC102200768,LOC101484004 coding upstream 299491 7762368 ~ 7784373 (-)
G316274 NA non-coding downstream 50671 7400353 ~ 7411843 (-)
G316269 NA non-coding downstream 65938 7396345 ~ 7396576 (-)
G316044 NA non-coding downstream 336199 7126091 ~ 7126315 (-)
G315963 NA non-coding downstream 448038 7013395 ~ 7014476 (-)
G315945 NA non-coding downstream 499384 6958088 ~ 6963130 (-)
G316311 LOC108280674 non-coding upstream 29539 7492416 ~ 7494371 (-)
G316318 ret2,rbp2,LOC103044214,LOC108410483,LOC108239352,LOC107567571,LOC106613114 non-coding upstream 37538 7500415 ~ 7504729 (-)
LOC117600000 NA non-coding upstream 106356 7569233 ~ 7570471 (-)
G316377 NA non-coding upstream 143347 7606224 ~ 7607655 (-)
G316394 NA non-coding upstream 205879 7668756 ~ 7669002 (-)
limk1a limk1,LOC107663742 other downstream 813119 6593269 ~ 6649395 (-)
trnat-agu_16 NA other downstream 2240679 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 2241498 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 2241980 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 2466509 4963065 ~ 4996005 (-)
rps28 rps28 other upstream 102204 7565081 ~ 7568134 (-)
vcpip1 vcpip1 other upstream 1014346 8477223 ~ 8488629 (-)
G317176 NA other upstream 1420772 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 1440947 8903824 ~ 8954110 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other upstream 1506327 8969204 ~ 8973275 (-)

Expression


Co-expression Network