mfsd1 (mfsd1,LOC106580941)


Basic Information

Item Value
gene id mfsd1
gene name mfsd1,LOC106580941
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5693664 ~ 5709552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941491.2
TTGCAGTCACATGACGTCGTGTGGTCACATGATcttaaatttctttctttgctcTTCATTAAAGGCTACAGGAGATTGAAGTAAAGCGCGGAAATGGCTGACAGGCAAGAAAACCAAAGGCTTTTAAGTGAAAATGGACATGATGGTGGAAGCAGAAGACGCATGTCCCCGTTTTGTGACCCGAATCATTTACTCCACCGAATTGTCGTccttgtttttatgtgttttctgGGATtcgGAAGCTACTTCTGTTATGATAACCCGGCTGCTCTTCAGAAACAAGTCATCCAGGATATGCAGTTAAACACCTCCAAATTCATGCAGCTTTATGCCTGGTACTCATGGCCCAATGTATTTCTCTGTTTCCTGGGAGGATTTTTGTTGGACAGGGTATTTGGCATCAGGTTGGGGACAGTCATCTTTgcactctttgtgtgtgttggacaggtCATATTTGCCCTCGGTGCTTTGGTCAACCATTTCTGGTTGATGGAATTTGGGCGCTTTGTTTTTGGTATTGGAGGAGAGTCTTTGGCTGTGGCTCAGAACACATACGCAGTGAATTGGTTCAAAGGAAAGGAGCTTAACCTGGTATTCGGACTGCAGCTCAGCATGGCGAGAGTGGGCAGTACAGTGAACATGAACATCATGAGCTGGGTGTATGATCAAATGACAGACTCACTGGGCTACACCGGTCACTTTGCTCTCGGAGCTGCGCTCATGATCGCGGCTTTGACATGTGTCTTATCTCTGATCTGTGCTCTCCTATTGGCCTACTTTGACAAGCGGGCAGAGAGGATTCTCAACAAGGAGCAGGGAAAGACTGGTGAAGTGATCAAGCTGAAGGATGTAAAGGACTTCCCTTTTCAACTGTGGATGATCTTCATCGTCTGTGTGGGATATTATGTGGCCATCTTCCCCTTTATTGGCTTGGGACAGGTTTTCTTCATTGAGAAGTTTAACTTCACTCCGACCCAGGCAAGAGCAATCAACAGCATTGTGTACATCATCTCAGCTCCAGCCTCCCCTGTGTTGGGTTTCATGGTGGATAAAACGGGCAAGAACATCACATGGGTTCTGTGTGCTGTGGTCACCACGCTGATTGCTCACATGATGTTGGCTTTTACTTTCTGGAATCCCTGGTTTGCTATGGTCCTTTTGGGTGTGTCATATTCACTGTTGGCCTGTGCTCTCTGGCCAATGGTGGCCTTTGTAGTGCCAGAACACCAACTGGGCACGGCATATGGATTtATGCAGTCCATACAGAACCTGGGTTTGGCACTTATCTCCATGGCAGCAGGAGCCATTCTCGACAGCAAGGGTTACCTCTTCCTGGAGGTCTTCTTCTGTGCATGCATCTGCTTGGCTCTGATAGCAGTGGTGATGCTTTACTTTGCGGACTTTGTCCGAGGTGGAGAACTGAACCTTTCGGCCTCTGCCCGAGCCAGACTCCAGAAGGGCTCATCTGCTGAGTCAGAggtgcCACAGAGGCTGCAAATCTTAAAGAAGCAGCGGGAGGAGCAGGCTCATTTCAAACCCCTGTCCTCATTTGTCCTTCGTAATCGCTATCTCTCCAGACTGGGGGCGCAGCTCCCAGACCACTACAACATCCATCTGTCCTCCCTTGCTTACAGAAGTTTGCTCCGATGATCTGCTCTTAAAGATAGTCATCCATTGTCTCACTGTGAACTAACGCAtgggctaaaaaaaaacactgcatgatGCTTTTGGTGTTTCTGTGGGGATGTAAACTGCACAATACAACCCTTTTTGGTTCAGGCAATTTTAAGTATTTATGGGCACTCTCCCTGTTCAGGTAATTCATGTCAGTTCATGTCAGTGTTCTATTACTTAGATTAACACCCAACACTGTTTATGGATTGTTATGTTTTTCACTATTGCACTTTAATCTGGTGAACAGAAATTGTATTGTACTTATTTTATGATTGTATATCAGGCAACACTAtttaataaagacatttttac
>XM_026941492.2
TTGCAGTCACATGACGTCGTGTGGTCACATGATcttaaatttctttctttgctcTTCATTAAAGGCTACAGGAGATTGAAGTAAAGCGCGGAAATGGCTGACAGGCAAGAAAACCAAAGGCTTTTAAGTGAAAATGGACATGATGGTGGAAGCAGAAGACGCATGTCCCCGTTTTGTGACCCGAATCATTTACTCCACCGAATTGTCGTccttgtttttatgtgttttctgGGATtcgGAAGCTACTTCTGTTATGATAACCCGGCTGCTCTTCAGAAACAAGTCATCCAGGATATGCAGTTAAACACCTCCAAATTCATGCAGCTTTATGCCTGGTACTCATGGCCCAATGTATTTCTCTGTTTCCTGGGAGGATTTTTGTTGGACAGGGTATTTGGCATCAGGTTGGGGACAGTCATCTTTgcactctttgtgtgtgttggacaggtCATATTTGCCCTCGGTGCTTTGGTCAACCATTTCTGGTTGATGGAATTTGGGCGCTTTGTTTTTGGTATTGGAGGAGAGTCTTTGGCTGTGGCTCAGAACACATACGCAGTGAATTGGTTCAAAGGAAAGGAGCTTAACCTGGTATTCGGACTGCAGCTCAGCATGGCGAGAGTGGGCAGTACAGTGAACATGAACATCATGAGCTGGGTGTATGATCAAATGACAGACTCACTGGGCTACACCGGTCACTTTGCTCTCGGAGCTGCGCTCATGATCGCGGCTTTGACATGTGTCTTATCTCTGATCTGTGCTCTCCTATTGGCCTACTTTGACAAGCGGGCAGAGAGGATTCTCAACAAGGAGCAGGGAAAGACTGGTGAAGTGATCAAGCTGAAGGATGTAAAGGACTTCCCTTTTCAACTGTGGATGATCTTCATCGTCTGTGTGGGATATTATGTGGCCATCTTCCCCTTTATTGGCTTGGGACAGGTTTTCTTCATTGAGAAGTTTAACTTCACTCCGACCCAGGCAAGAGCAATCAACAGCATTGTGTACATCATCTCAGCTCCAGCCTCCCCTGTGTTGGGTTTCATGGTGGATAAAACGGGCAAGAACATCACATGGGTTCTGTGTGCTGTGGTCACCACGCTGATTGCTCACATGATGTTGGCTTTTACTTTCTGGAATCCCTGGTTTGCTATGGTCCTTTTGGGTGTGTCATATTCACTGTTGGCCTGTGCTCTCTGGCCAATGGTGGCCTTTGTAGTGCCAGAACACCAACTGGGCACGGCATATGGATTtATGCAGTCCATACAGAACCTGGGTTTGGCACTTATCTCCATGGCAGCAGGAGCCATTCTCGACAGCAAGGGTTACCTCTTCCTGGAGGTCTTCTTCTGTGCATGCATCTGCTTGGCTCTGATAGCAGTGGTGATGCTTTACTTTGCGGACTTTGTCCGAGGTGGAGAACTGAACCTTTCGGCCTCTGCCCGAGCCAGACTCCAGAAGGGCTCATCTGCTGAGTCAGAGTGATAGCTGTTCAGTCCACTGGCTCCACCCTTCCTGCTGTGATCTGTCTCACTGGACAACACTCCCTGTCAATCACCCACCAATGGGCATTTCTGCACTACTTACTCCTCTTCGTCACACTGACCACTCTAATCCCAACACAGGGGTATAGGGCCCGCTCAAATAGCCTTCTACCCGCAAATAGAACTTTTAATAATCACTGCTGTGTTAAAAGTAGGATTGGGATATTGTACAGGCTGAGGAGAGGAGGATGGATTCGATTTGGCTGGTTGGGTCATGCCAGAGAGGATGTCCTGCCACTCTAACTCCACCTCAGGGCAGCTGGCACTCAGTCATGGACACTGAAAATACAACTTCCTTTTTACTCTCGGTATCATTTAGCGCCAGTTCTTTCCACAGACCTTTGCACTGGTGAATCTTCACCCACTGGAAAACTTACTGGGATGTAGCTAATGCTTTCTATTCACGGGTTCACAACACCCTACATTTTGGTACCTCACCCCCTGTGAGAAGCCATGTTGTGGCTCTTCTGACTTTTACATGACCTCACTTGACAGATGAGTCGGGTGTTTTTAttcctggttttattttttt

Function

symbol description
mfsd1 Predicted to enable protein homodimerization activity. Predicted to be involved in protein localization to lysosome and protein stabilization. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosome. Orthologous to human MFSD1 (major facilitator superfamily domain containing 1).

NR:

description
major facilitator superfamily domain-containing protein 1-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941491.2 False 1986 mRNA 0.46 17 5693664 5709552
XM_026941492.2 True 2073 mRNA 0.48 16 5696268 5709552

Neighbor

gene id symbol gene type direction distance location
schip1 schip1,LOC103369651,LOC106580942,LOC104954265,LOC102193686,LOC106612913,LOC100701131,LOC107081925,LOC103148079,LOC108240933,LOC101468843,LOC107750091,LOC108424074,LOC107551285,LOC108280660 coding downstream 2690 5384557 ~ 5690974 (-)
il12a NA coding downstream 316694 5371068 ~ 5376970 (-)
LOC113543027 NA coding downstream 364052 5326516 ~ 5329612 (-)
smc4 smc4,LOC107720450 coding downstream 444540 5228146 ~ 5249124 (-)
nmd3 nmd3 coding downstream 576430 5101590 ~ 5117234 (-)
gfm1 gfm1 coding upstream 7037 5716589 ~ 5730765 (-)
LOC117599999 LOC108280333 coding upstream 23201 5732753 ~ 5734846 (-)
mlf1 mlf1 coding upstream 35855 5745407 ~ 5756063 (-)
rsrc1 rsrc1 coding upstream 49168 5758720 ~ 5891773 (-)
LOC113543271 LOC108280635,LOC108424020 coding upstream 399817 6109369 ~ 6122309 (-)
G315225 NA non-coding downstream 82684 5610754 ~ 5610980 (-)
G315213 NA non-coding downstream 128889 5564563 ~ 5564775 (-)
G315175 NA non-coding downstream 232073 5461387 ~ 5461591 (-)
G315172 NA non-coding downstream 244535 5448924 ~ 5449129 (-)
G315142 NA non-coding downstream 359785 5333669 ~ 5333879 (-)
G315381 NA non-coding upstream 13398 5722950 ~ 5723322 (-)
G315393 NA non-coding upstream 190558 5900110 ~ 5900708 (-)
G315595 NA non-coding upstream 513803 6223355 ~ 6224613 (-)
G315604 LOC108280887,LOC103033590,LOC108424028 non-coding upstream 554076 6263628 ~ 6264498 (-)
G315606 NA non-coding upstream 556377 6265929 ~ 6266300 (-)
trnat-agu_16 NA other downstream 471829 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 472648 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 473130 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 697659 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 876493 4800480 ~ 4817171 (-)
limk1a limk1,LOC107663742 other upstream 883717 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 1855529 7565081 ~ 7568134 (-)
vcpip1 vcpip1 other upstream 2767671 8477223 ~ 8488629 (-)
G317176 NA other upstream 3174097 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 3194272 8903824 ~ 8954110 (-)

Expression


Co-expression Network