Gene
RNA
| Item | Value |
|---|---|
| gene id | G315213 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 5564563 ~ 5564775 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU373331 | True | 213 | lncRNA | 0.34 | 1 | 5564563 | 5564775 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| il12a | NA | coding | downstream | 187593 | 5371068 ~ 5376970 (-) |
| LOC113543027 | NA | coding | downstream | 234951 | 5326516 ~ 5329612 (-) |
| smc4 | smc4,LOC107720450 | coding | downstream | 315439 | 5228146 ~ 5249124 (-) |
| nmd3 | nmd3 | coding | downstream | 447329 | 5101590 ~ 5117234 (-) |
| otol1b | otol1,LOC107734882 | coding | downstream | 484925 | 5073164 ~ 5079638 (-) |
| mfsd1 | mfsd1,LOC106580941 | coding | upstream | 128889 | 5693664 ~ 5709552 (-) |
| gfm1 | gfm1 | coding | upstream | 151814 | 5716589 ~ 5730765 (-) |
| LOC117599999 | LOC108280333 | coding | upstream | 167978 | 5732753 ~ 5734846 (-) |
| mlf1 | mlf1 | coding | upstream | 180632 | 5745407 ~ 5756063 (-) |
| rsrc1 | rsrc1 | coding | upstream | 193945 | 5758720 ~ 5891773 (-) |
| G315175 | NA | non-coding | downstream | 102972 | 5461387 ~ 5461591 (-) |
| G315172 | NA | non-coding | downstream | 115434 | 5448924 ~ 5449129 (-) |
| G315142 | NA | non-coding | downstream | 230684 | 5333669 ~ 5333879 (-) |
| G315141 | NA | non-coding | downstream | 232410 | 5331894 ~ 5332153 (-) |
| G315075 | NA | non-coding | downstream | 336946 | 5227228 ~ 5227617 (-) |
| G315225 | NA | non-coding | upstream | 45979 | 5610754 ~ 5610980 (-) |
| G315381 | NA | non-coding | upstream | 158175 | 5722950 ~ 5723322 (-) |
| G315393 | NA | non-coding | upstream | 335335 | 5900110 ~ 5900708 (-) |
| G315595 | NA | non-coding | upstream | 658580 | 6223355 ~ 6224613 (-) |
| G315604 | LOC108280887,LOC103033590,LOC108424028 | non-coding | upstream | 698853 | 6263628 ~ 6264498 (-) |
| trnat-agu_16 | NA | other | downstream | 342728 | 5221762 ~ 5221835 (-) |
| trnat-agu_15 | NA | other | downstream | 343547 | 5220943 ~ 5221016 (-) |
| trnat-agu_14 | NA | other | downstream | 344029 | 5220461 ~ 5220534 (-) |
| LOC113543250 | znf236 | other | downstream | 568558 | 4963065 ~ 4996005 (-) |
| fbxl4 | fbxl4 | other | downstream | 747392 | 4800480 ~ 4817171 (-) |
| limk1a | limk1,LOC107663742 | other | upstream | 1028494 | 6593269 ~ 6649395 (-) |
| rps28 | rps28 | other | upstream | 2000306 | 7565081 ~ 7568134 (-) |
| vcpip1 | vcpip1 | other | upstream | 2912448 | 8477223 ~ 8488629 (-) |
| G317176 | NA | other | upstream | 3318874 | 8883649 ~ 8885709 (-) |
| pitrm1 | pitrm1,LOC107698483,LOC107679400 | other | upstream | 3339049 | 8903824 ~ 8954110 (-) |
