G315393


Basic Information

Item Value
gene id G315393
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5900110 ~ 5900708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU373526
TTTCATGAGAAACTCTGTTTCAGATAAAACGAggccagcctctttttttttaactatttcttgtttttttttttttaaaacagcaaactACGCAGAAAGTGTTCACTTTGTCACACAGGAGTCCAACGTCCCAGCTGCGTTTGCACACATTCGGAATGAGTTTTGTCTTGGACAAATGGTTTCCGCTTCCGGTTCGTCCTGGTTGCAACCTGCATCCGTGACAGGCTTCACTTCGATTTCACAGTTTGTGTTGTTCATGTCATAAATAAGCCTTTATTCTGGAGTGTCCTTCATAAGAGAGTATAAATAACGTCCTAGTGTTGTGAGTGTGCACTGTGCCCGCCCGCGCGCGCGCGCACCGGCGTGTCACAGTCCGAGCGCCGCCGCGTGCTTCTTGGCCTTCAGTCTCAGATCCGCGATGCTCGAGTTCTTGTTGCTGTTTTTGGCGGCGGCGGCTGCGGCCACCACCGACGCCGCCGAGGCAGACTCCGCCGCCAGCGTGGCCAAGGGCAAGCCGAACGGCGGCGCGGGGAACATCATGTAGGGCGCGTGCGCCGCCAGGTGAGAGTGCAGGTGATGGTGCGCGTGGGCCACGGCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU373526 True 599 lncRNA 0.54 1 5900110 5900708

Neighbor

gene id symbol gene type direction distance location
rsrc1 rsrc1 coding downstream 8337 5758720 ~ 5891773 (-)
mlf1 mlf1 coding downstream 144047 5745407 ~ 5756063 (-)
LOC117599999 LOC108280333 coding downstream 165264 5732753 ~ 5734846 (-)
gfm1 gfm1 coding downstream 169345 5716589 ~ 5730765 (-)
mfsd1 mfsd1,LOC106580941 coding downstream 190558 5693664 ~ 5709552 (-)
LOC113543271 LOC108280635,LOC108424020 coding upstream 208661 6109369 ~ 6122309 (-)
mmp28 mmp28 coding upstream 248208 6148916 ~ 6177313 (-)
taf15 taf15,LOC103474459,LOC106937209,LOC102220690 coding upstream 277149 6177857 ~ 6184553 (-)
porb LOC108280677,LOC108424088,LOC107728227,LOC107598574,LOC107703971 coding upstream 285404 6186112 ~ 6216265 (-)
LOC113543363 LOC108280872 coding upstream 324073 6224781 ~ 6225455 (-)
G315381 NA non-coding downstream 176788 5722950 ~ 5723322 (-)
G315225 NA non-coding downstream 289130 5610754 ~ 5610980 (-)
G315213 NA non-coding downstream 335335 5564563 ~ 5564775 (-)
G315175 NA non-coding downstream 438519 5461387 ~ 5461591 (-)
G315172 NA non-coding downstream 450981 5448924 ~ 5449129 (-)
G315595 NA non-coding upstream 322647 6223355 ~ 6224613 (-)
G315604 LOC108280887,LOC103033590,LOC108424028 non-coding upstream 362920 6263628 ~ 6264498 (-)
G315606 NA non-coding upstream 365221 6265929 ~ 6266300 (-)
G315721 NA non-coding upstream 573624 6474332 ~ 6474532 (-)
G315861 NA non-coding upstream 822305 6723013 ~ 6723230 (-)
trnat-agu_16 NA other downstream 678275 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 679094 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 679576 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 904105 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 1082939 4800480 ~ 4817171 (-)
limk1a limk1,LOC107663742 other upstream 692561 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 1664373 7565081 ~ 7568134 (-)
vcpip1 vcpip1 other upstream 2576515 8477223 ~ 8488629 (-)
G317176 NA other upstream 2982941 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 3003116 8903824 ~ 8954110 (-)

Expression


Co-expression Network