mlf1 (mlf1)


Basic Information

Item Value
gene id mlf1
gene name mlf1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5745407 ~ 5756063 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940870.2
TTTTTAAAGTAACGCGAGTGGCGATAATAAGCGCATTAGTGTGTCAGGGGCTGCTGCGGAGGCTGCCAAGGAAACCTACAATACTTATAAAATTCATAGCGTTTTAGATAAACTGTTTGTTGTAACCTGTGGAGATGTTCAACAGCCATCTCAGGGACTTTGAGGACGACCCCTTCTTTTCctCAACAAGTGATCCTTTCCGCGTACACAATGAACGAATGCACCAAATGATGAGGGGTTTTTCGGATCCCTTCAGCCAcggcctcatgcccagtgtcaCAGATGGCCGGGACAGAGGACGCAGGGGAGAAGGTCAGGCCCGCACAAGTGTAGCCCTCCGCAACGAGGACAGAGACATGGATTTCTTCAGGAACCCTTTTGCAATGATGGACAACATGATAGCAGGCATGAGGAACAGAATGGAGGATATGCACAGAAACTTTGAGAACGTGCAGTCAGACTCCGACACGCACGCGTTCAGCTCCTCCTCAGTCATGACTTACTCTAAAGTAGGAGACGAACCAGCCAAAGTGTTTCAGGCCTCCACCCAGACACGCTGCGCCCCCGGAGGGattaaGGAAACAAGACGGACTCTGAGAGACACCGATAGTGGGGTGGAAAAGATGTCCATTGGTCACCACATCAATGACAGGGGACACGTCATTGAgaagaaacacaacaaaaagaCAGGAGAAAGAGAGTTTAACCAGGACTTTCAGAACATGGATGAGACTGAAGCCCAGACCTTCGATGAGGAGTGGCAGCAGAAGGTGTCTGAATTTCAGCCTGCTGCACGGCTGTCCTATCTGGAGGCCCCACGAGCCAGAGCAGCTCACCGAGCAGCCATCACCggccctgaacacacacacagAGGGAAGAAAGATAAACCAGCAGAAGGtcagaagaaaacacacatttctgaacTCAACATTCAAGGCTCCAGCATGAAGAAGGAATAAAAACtttacaaactgaaataaaactctCTGGCAGGCAACATCTCCCTGATGATTTTCATGCGAGTGCTTTTATTCTTCTGTGTTTCCGTGCAtcttttttctgtaatgtaaaCTAAACTAAAGCTAGCCAtccagatttgttttttttttttttttgtgttttttttttttaattttacctcTTCATTCTTTCTGTTTAAGGAAAAAATGTTACCTGTTAAGTTGATTCTTAATGGCTGGTGTAACCAAATATCATGAAATGTaatgatatttacacacacacacacatacacacacatcttttgACAGTGAAAGGTAAGTTGAATTTTACCTGTATGCTTGAATATCATagtgatttaattaaaatgagcacaaaaAGGGTGGGTCTCCCACTAATTAATACAGAGATGTTCTAAAATGCACTTATGAACATAACTTGTGTGTAATTGACTATTATGGCCATCCATTGTGGAAAAAATATCACTCGCTGTGCCCACTTGTAAAGAATTACAAAACTTTTTATAAAATTCTTTGTCATAATCTCATTTTCAGGTTGTccattttgtgttaaattgtgtctgctgttctctttttttcaaaagTGAAAGACACAATAAAGACTCATTTATTTA
>XM_026940871.2
TTTTTAAAGTAACGCGAGTGGCGATAATAAGCGCATTAGTGTGTCAGGGGCTGCTGCGGAGGCTGCCAAGGAAACCTACAATACTTATAAAATTCATAGCGTTTTAGATAAACTGTTTGTTGTAACCTGTGGAGATGTTCAACAGCCATCTCAGGGACTTTGAGGACGACCCCTTCTTTTCTGATCCTTTCCGCGTACACAATGAACGAATGCACCAAATGATGAGGGGTTTTTCGGATCCCTTCAGCCAcggcctcatgcccagtgtcaCAGATGGCCGGGACAGAGGACGCAGGGGAGAAGGTCAGGCCCGCACAAGTGTAGCCCTCCGCAACGAGGACAGAGACATGGATTTCTTCAGGAACCCTTTTGCAATGATGGACAACATGATAGCAGGCATGAGGAACAGAATGGAGGATATGCACAGAAACTTTGAGAACGTGCAGTCAGACTCCGACACGCACGCGTTCAGCTCCTCCTCAGTCATGACTTACTCTAAAGTAGGAGACGAACCAGCCAAAGTGTTTCAGGCCTCCACCCAGACACGCTGCGCCCCCGGAGGGattaaGGAAACAAGACGGACTCTGAGAGACACCGATAGTGGGGTGGAAAAGATGTCCATTGGTCACCACATCAATGACAGGGGACACGTCATTGAgaagaaacacaacaaaaagaCAGGAGAAAGAGAGTTTAACCAGGACTTTCAGAACATGGATGAGACTGAAGCCCAGACCTTCGATGAGGAGTGGCAGCAGAAGGTGTCTGAATTTCAGCCTGCTGCACGGCTGTCCTATCTGGAGGCCCCACGAGCCAGAGCAGCTCACCGAGCAGCCATCACCggccctgaacacacacacagAGGGAAGAAAGATAAACCAGCAGAAGGtcagaagaaaacacacatttctgaacTCAACATTCAAGGCTCCAGCATGAAGAAGGAATAAAAACtttacaaactgaaataaaactctCTGGCAGGCAACATCTCCCTGATGATTTTCATGCGAGTGCTTTTATTCTTCTGTGTTTCCGTGCAtcttttttctgtaatgtaaaCTAAACTAAAGCTAGCCAtccagatttgttttttttttttttttgtgttttttttttttaattttacctcTTCATTCTTTCTGTTTAAGGAAAAAATGTTACCTGTTAAGTTGATTCTTAATGGCTGGTGTAACCAAATATCATGAAATGTaatgatatttacacacacacacacatacacacacatcttttgACAGTGAAAGGTAAGTTGAATTTTACCTGTATGCTTGAATATCATagtgatttaattaaaatgagcacaaaaAGGGTGGGTCTCCCACTAATTAATACAGAGATGTTCTAAAATGCACTTATGAACATAACTTGTGTGTAATTGACTATTATGGCCATCCATTGTGGAAAAAATATCACTCGCTGTGCCCACTTGTAAAGAATTACAAAACTTTTTATAAAATTCTTTGTCATAATCTCATTTTCAGGTTGTccattttgtgttaaattgtgtctgctgttctctttttttcaaaagTGAAAGACACAATAAAGACTCATTTATTTA

Function

symbol description
mlf1 Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including Kupffer's vesicle; cardiovascular system; mesoderm; musculature system; and sensory system. Orthologous to human MLF1 (myeloid leukemia factor 1).

NR:

description
PREDICTED: myeloid leukemia factor 1 isoform X2

GO: NA

KEGG:

id description
K15622 MLF1; myeloid leukemia factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940870.2 True 1591 mRNA 0.42 8 5745407 5756063
XM_026940871.2 False 1582 mRNA 0.42 7 5745407 5756063

Neighbor

gene id symbol gene type direction distance location
LOC117599999 LOC108280333 coding downstream 10561 5732753 ~ 5734846 (-)
gfm1 gfm1 coding downstream 14642 5716589 ~ 5730765 (-)
mfsd1 mfsd1,LOC106580941 coding downstream 35855 5693664 ~ 5709552 (-)
schip1 schip1,LOC103369651,LOC106580942,LOC104954265,LOC102193686,LOC106612913,LOC100701131,LOC107081925,LOC103148079,LOC108240933,LOC101468843,LOC107750091,LOC108424074,LOC107551285,LOC108280660 coding downstream 54433 5384557 ~ 5690974 (-)
il12a NA coding downstream 368437 5371068 ~ 5376970 (-)
rsrc1 rsrc1 coding upstream 2657 5758720 ~ 5891773 (-)
LOC113543271 LOC108280635,LOC108424020 coding upstream 353306 6109369 ~ 6122309 (-)
mmp28 mmp28 coding upstream 392853 6148916 ~ 6177313 (-)
taf15 taf15,LOC103474459,LOC106937209,LOC102220690 coding upstream 421794 6177857 ~ 6184553 (-)
porb LOC108280677,LOC108424088,LOC107728227,LOC107598574,LOC107703971 coding upstream 430049 6186112 ~ 6216265 (-)
G315381 NA non-coding downstream 22085 5722950 ~ 5723322 (-)
G315225 NA non-coding downstream 134427 5610754 ~ 5610980 (-)
G315213 NA non-coding downstream 180632 5564563 ~ 5564775 (-)
G315175 NA non-coding downstream 283816 5461387 ~ 5461591 (-)
G315172 NA non-coding downstream 296278 5448924 ~ 5449129 (-)
G315393 NA non-coding upstream 144047 5900110 ~ 5900708 (-)
G315595 NA non-coding upstream 467292 6223355 ~ 6224613 (-)
G315604 LOC108280887,LOC103033590,LOC108424028 non-coding upstream 507565 6263628 ~ 6264498 (-)
G315606 NA non-coding upstream 509866 6265929 ~ 6266300 (-)
G315721 NA non-coding upstream 718269 6474332 ~ 6474532 (-)
trnat-agu_16 NA other downstream 523572 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 524391 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 524873 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 749402 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 928236 4800480 ~ 4817171 (-)
limk1a limk1,LOC107663742 other upstream 837206 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 1809018 7565081 ~ 7568134 (-)
vcpip1 vcpip1 other upstream 2721160 8477223 ~ 8488629 (-)
G317176 NA other upstream 3127586 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 3147761 8903824 ~ 8954110 (-)

Expression


Co-expression Network