smc4 (smc4,LOC107720450)


Basic Information

Item Value
gene id smc4
gene name smc4,LOC107720450
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5228146 ~ 5249124 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034297748.1
GCTTTGCGGCAGATTGTAACGAATTTAGGCGCCATTTTCAAGTTGGGTTTTTTCCCCTGAGCAGAGTCGGGGAAACTAAGACGGCAGGATTTtcgctttatttttttaaaattttttttattttttaaattaagctgcacaattttcatttttgtggaTTATCACAGGGAATCCTCACCACAGAAGTCCAAACTATTCGACGGAAAATTAAAGATTTGTAGCATGCCCTCGAAAACGACTAAAAGCTCCTCGGCTGCGAAGCCCCGGGGGAAAGGGTCGCAGGATGACGGTGATGATGAGATGAAGGAAATAAAGCCTCATGGAGAAGTGCACGCAGATGATCAGGACGCACCGCAGACTAATGATGCCGCTGGTGAGGCGGTGGATAACCGGAGCCTGGAGGAGATTCTCGGTAGCATccctccacccccaccccccgCGATGACCAACGAACCGGGCGCTCCCCGCCTCATGATCACGCACATCGTCAATCGGAACTTCAAATCATACGCCGGGGAGCAGATCCTAGGGCCTTTCCATAAGCGCTTTTCCTGTATCATCGGTCCAAACGGCAGCGGGAAATCCAACGTGATCGACTCGATGCTCTTCGTATTTGGATACAGAGCGCAAAAAATCAGGTCCAAAAAGCTGTCTGTGCTTATTCACAGTTCTGACGGGCACAAGGACATCCAGAGCTGCACTGTAGAGGTGCACTTTCAGAAGATTATCGACaagGAAGGAGATGACTACGATGTCATCCCTGACAGCAAGTTTTACGTTTCAAGAACTGCCGGTAAAGATAATTCCTCATCCTACCACATCAATGGCAAAAAGGCAACCTTCAAAGATGTTGGAATTTTGCTCCGTAGCCATGGCATTGACCTTGACCACAACCGATTTCTCATTCTACAGGGAGAAGTGGAGCAGATTGCGATGATGAAGCCCAAAGGCCAGACGGAGCATGATGAAGGCATGCTGGAATACCTGGAGGACATCATTGGCTCCTGCCGACTCAAAGAGCCCATCAACACGCTGTGCAGACGAGTGGAGCTACTAAATGAGCAGAGAGGGGAAAAGCTGAATCGTGTGAAGTtggtggagaaggagaagaatgCCCTGGAGGGTGAAAAGAATAAAGCAGTGGAATTTCTCACCCTAGAGAATGACATGTTTAAGAAGAGAAGCCAACTCTGCCAGTTCTATGTACATGATTTGCAGCAGCGTGTGGCTGAAAAGGAAGCAGAAAAACAAGAGATCCAGGAGGACACCAAGGGACTGACTGAAAAAAGCAACCAGCTCACAGAGGAAATGAAGGGGAAGAATGAAGCCCTGAAGAATGTGGAGAAGAAAGTGGGCAAGCTGACCAAGTTCATTGAGAGCCAGAAGGAGAAGTTCACCCAGTTGGACCTCCAGGACGTGGAGGTGCGGGAGAAGCTCAAGCACACCAAGAACAAGGCCAAGAAACTCCACAAACAGCTGCAGAAGGACAAGGAAaagttggAGGAAGTGAAAAACGTTCCAGCCAGCAGTGAAAAGATCATCACAGAGGCTTCTGCCCAGAAAGAAATGTTGGAGAAAGAGAAGGTTAAGGAGGAAGCAGCTCTGGCCCAGGTGATGGAGCGCCTGAAGGAGGAGACCAGTGGCTTGCAGCAGGAAAAGGAGCAAAAAGAGAAGGAGCTTCTGGAGCTAAGTAAAGCTGTGAATGAGACCCGCTCGCAGATGGACGTAGCTCAGTCAGAGCTGGACATCTACCTGAGTCAGCACAACACAGCCGTTTCACAGCTCAACCAGGCTAAGGAGGCCCTACAGGGAACTGCTGACACACTCAAAGACAGAAGAGCTGCCATCAAAGAGCTGAAGGTCAAAGTTCCCAAGTGTGAGCAGGAGCTTAAAAAGgatgaAGAGGAGCTGAAGCAGATTTCTGAGCAGGATGGAGAGGCCCAGGCTATGGTCAGGGACATAAGGCAGAAGGTTGAAGAGGCCAAGTCCTCTCTGTCCACCACCCGCAGCCGAGGCAAAGTGCTTGACGCACTCATGCAGCAGAAACGCAGTGGCAAGATCCCTGGCATCCTGGGACGTCTGGGTGATCTGGGAGCTATTGAGGAGAAATATGACATTGCTATCTCATCAAGTTGTGGCGCACTCGATAACATTGTGGTGAACACCATTGACACAGCTCAGAAATGTGTCACCTTCCTTAAGGCCCAGAATATTGGAGTGGCGACCTTCATTGGTCTAGATAAGATGAAGGTCTGGGAGAAAAACATGAGAGCCATCTCCACACCAGAGAACATTCCCCGTTTGTTTGATATGGTCAAAGTAAAGGATGATTCCGTCCGTCCCGCCTTCTACTTCGCCCTGAGAGATACCCTGGTGGCTAAAGACCTGGAGCAGGCGACTAGAGTGGCCTTCCAGAAAGACAAACGCtggagagtggtcactctgcAGGGACAGATCATCGAACaggctgGCACTATGACGGGAGGAGGAGGGCGTGTAATGAAAGGGAGAATGGGCTCTTCTATTGGCACTGAAGTCACACAGGAACAGctgGACAAAATGGAGAGTGCATTAAAGGAGAAGGTGGCGCAGCTGCAGGGCTGGCAGCAAAGGAAACAGCAGCTTGAGGAGAGTGTGCACAAACAGAGACAGGAGCTCAGAGACATGAAGAACACGTTGGAGAAATACACAGCCAGCATTCAGAGTCTTGAGGAGCAAGAGATTCACCTGAAGTCTCAGATAAAGGAGCTGGAAGCAAATGTTATTGCTGCTGCCCCAGACAAAGCCAAGCAAAAACAGATGGAGAAAAACCTGGAAGCCTTCAAGAAAAATTATGAGGCTGCATCCAGTAAGGCAGGAAAGGTTGAAGCTGAGGTGAAACGACTCCACAACCTAATTGTGGACATCAACAGCCATAAGTTGAAGGCCCAACAGGATAAACTGGATAAGATCAACAAAGAGCTTGATGAGTGTTCATCAGCAATCACCAAAGCCCAAGTGGCTATCAAGACGGCAGGACGTAATCTGAAAAAGGCAGAGGAGACGGTTACGCGACTGGAAACTGAGATTGCAGAGAATGAGAAATTAATGGAGGAGCTCACAGAGCAGCTGAAGAAACTGGAGGATCAAGCAGGAGAGATCATGAAGTCCTGCCAGGAGGCTGAGGAGGCGATGCCTGAGGTGCAGGAACAGCATCGGGGGGTCTTGCAGGAGATCAAGGCTCTTCAGGAACAAGAGCACGCTCTGCAGAAAGAGTCGCTGAATGTTCGGCTGAAAGTGGAGCAAATCGACACAGCCATCGCTGAGTGTCAGAATAAGATCAAACACTGGGAAAAAGAGTCCACAAAGCTTGCTCTGCACTCGATTGATGATAAACCAGCAGAGGAACTGCCTAAGCTGACCACAGAGCAGTTGGAGGCCATTAAAAGCCCAGATGTCATCAAAAACGAGATTGCTCTTTTGGAGGATCGCTGTGCCCAGATGAAGCCCAACCTGGGAGCTATAGCAGAGTTTAAGAAGAAGgAGGAGCTTTATTTGCAGAGAGTAGCTGAGCTGGATGAGATTACCACCCAGAGAGACAACTTCAAGAGGAGCTGCGAGGACCTGCGGAAACAGAGACTGAACGAGTTCATGGCTGGCTTTAACATCATTACCAACAAGCTGAAGGAGAACTACCAGATGCTGACACTGGGGGGTGATGCTGAGCTGGAGCTTGTGGACAGCTTGGACCCTTTCTCTGAGGGCATCATGTTTAGTGTGCGTCCTCCTAAGAAGAGCTGGAAGAAAATCTATAACTTGTCTGGAGGAGAGAAGACTCTGAGCTCTTTGGCTTTGGTCTTCGCGCTGCACCACTTCAAGCCCACACCTCTGTACTTCATGGACGAGATAGACGCTGCTCTGGATTTCAAGAATGTGTCCATTGTGGCCTGTTACATATATGAACAAACCAAGAATGCGCAGTTCATAATCATCTCTCTGAGGAACAACATGTTTGAGATGGCTGACCGCCTGATTGGCatctacaaaacacacaacaccactAAAAACGTGGGAATCAACCCCAAAACCATTGTCCTCAAAGACATTGAAGTTGCATCAGgataaaacaacaaatataTCCTTGGACTTCTGTTGTCTTTGTCTGTGTTGATCGCTCTTAAATCTTTTTCTCTTGCACCTGTTTCCACATGAtcacatctatttttttttttttttttttttctcctgtgcaGGTTAAAGCAATTTAACCTTACTACAAATGCTGCTGTTTATACTATTAAActttatataaaacatgaa

Function

symbol description
smc4 Predicted to enable ATP binding activity. Predicted to be involved in mitotic chromosome condensation. Predicted to act upstream of or within chromosome organization. Predicted to be located in chromosome and nucleus. Is expressed in several structures, including digestive system; nervous system; optic cup; otic vesicle; and pectoral fin. Orthologous to human SMC4 (structural maintenance of chromosomes 4).

NR:

description
structural maintenance of chromosomes protein 4-like isoform X1

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0051276 chromosome organization biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K06675 SMC4; structural maintenance of chromosome 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034297748.1 True 4299 mRNA 0.48 24 5228146 5249124

Neighbor

gene id symbol gene type direction distance location
nmd3 nmd3 coding downstream 110912 5101590 ~ 5117234 (-)
otol1b otol1,LOC107734882 coding downstream 148508 5073164 ~ 5079638 (-)
znf407 znf407,LOC104948785 coding downstream 171928 5043496 ~ 5056218 (-)
LOC113543037 tshz1 coding downstream 199646 5018847 ~ 5028500 (-)
LOC113543211 galr1 coding downstream 344065 4868536 ~ 4884081 (-)
LOC113543027 NA coding upstream 77392 5326516 ~ 5329612 (-)
il12a NA coding upstream 121944 5371068 ~ 5376970 (-)
schip1 schip1,LOC103369651,LOC106580942,LOC104954265,LOC102193686,LOC106612913,LOC100701131,LOC107081925,LOC103148079,LOC108240933,LOC101468843,LOC107750091,LOC108424074,LOC107551285,LOC108280660 coding upstream 135433 5384557 ~ 5690974 (-)
mfsd1 mfsd1,LOC106580941 coding upstream 444540 5693664 ~ 5709552 (-)
gfm1 gfm1 coding upstream 467465 5716589 ~ 5730765 (-)
G315075 NA non-coding downstream 529 5227228 ~ 5227617 (-)
G315069 NA non-coding downstream 8317 5219549 ~ 5219829 (-)
G315021 NA non-coding downstream 11558 5211957 ~ 5216588 (-)
G315067 NA non-coding downstream 16240 5211673 ~ 5211906 (-)
G315019 NA non-coding downstream 16823 5132366 ~ 5211323 (-)
G315141 NA non-coding upstream 82770 5331894 ~ 5332153 (-)
G315142 NA non-coding upstream 84545 5333669 ~ 5333879 (-)
G315172 NA non-coding upstream 199800 5448924 ~ 5449129 (-)
G315175 NA non-coding upstream 212263 5461387 ~ 5461591 (-)
G315213 NA non-coding upstream 315439 5564563 ~ 5564775 (-)
trnat-agu_16 NA other downstream 6311 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 7130 5220943 ~ 5221016 (-)
trnat-agu_14 NA other downstream 7612 5220461 ~ 5220534 (-)
LOC113543250 znf236 other downstream 232141 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 410975 4800480 ~ 4817171 (-)
limk1a limk1,LOC107663742 other upstream 1344145 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 2315957 7565081 ~ 7568134 (-)
vcpip1 vcpip1 other upstream 3228099 8477223 ~ 8488629 (-)
G317176 NA other upstream 3634525 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 3654700 8903824 ~ 8954110 (-)

Expression


Co-expression Network