G315019


Basic Information

Item Value
gene id G315019
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5132366 ~ 5211323 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU373109
GGATAGTGTTGGATCAGACTGCAGGAAGCTGTGGGAGGAGCCACAGCCCCTGAGCAAGACAGCGGCACTGCGAGAGCTGTGGATGGGAGCGGTTTTGAGGCTTTAATCATCGGCCCAGTCACAGAAAAGCCTCTGTTTGAGTGATGAGCCTCAGATGCACTCCTTTATCTGCAATGACTCTGTGGTCTTGAGCACTCCCAGTCCATCAGCTGAAtaatccatacacacacacacacgcacacacacacacacacacacacacg
>TU373111
GGATAGTGTTGGATCAGACTGCAGGAAGCTGTGGGAGGAGCCACAGCCCCTGAGCAAGACAGCGGCACTGCGAGAGCTGTGGATGGGAGCGGTTTTGAGGCTTTAATCATCGGCCCAGTCACAGAAAAGCCTCTGTTTGAGTGATGAGCCTCAGATGCACTCCTTTATCTGCAATGACTCTGTGGTCTTGAGCACTCCCAGTCCATCAGCTGAAtaatccatacacacacacacacgcgcaccaTTAAAAACCCCCTTTAAACACTTCCTAAAATGTCCTGTTGTGAACCATAAAACTAAACCTAATCATGGTCTAGATCTATATCTAAGCTTTGTTCCTTGGCAGATCTTCATCCAGGGTGTCACCTACTTCTGTGGTCTGTACTAAATCTAAGCAAATTCAAAATCCAtgcacacatcacacacacacacacct
>TU373112
GGATAGTGTTGGATCAGACTGCAGGAAGCTGTGGGAGGAGCCACAGCCCCTGAGCAAGACAGCGGCACTGCGAGAGCTGTGGATGGGAGCGGTTTTGAGGCTTTAATCATCGGCCCAGTCACAGAAAAGCCTCTGTTTGAGTGATGAGCCTCAGATGCACTCCTTTATCTGCAATGACTCTGTGGTCTTGAGCACTCCCAGTCCATCAGCTGAAtaatccatacacacacacacacacacacacacacacacacacacacacacacacacacacg
>TU373113
GGATAGTGTTGGATCAGACTGCAGGAAGCTGTGGGAGGAGCCACAGCCCCTGAGCAAGACAGCGGCACTGCGAGAGCTGTGGATGGGAGCGGTTTTGAGGCTTTAATCATCGGCCCAGTCACAGAAAAGCCTCTGTTTGAGTGATGAGCCTCAGATGCACTCCTTTATCTGCAATGACTCTGTGGTCTTGAGCACTCCCAGTCCATCAGCTGAAtaatccatacacacacacacacgcgcaccaTTAAAAACCCCCTTTAAACACTTCCTAAAATGTCCTGTTGTGAACCATAAAACTAAACCTAATCATGGTCTAGATCTATATCTAAGCTTTGTTCCTTGGCAGATCTTCATCCAGGGTGTCACCTACTTCTGTGGTCTGTACTAAATCTAAGCAAATTCAAAATCCAtgcacacatcaaacacacaaTTTAAACTTG
>TU373114
GGATAGTGTTGGATCAGACTGCAGGAAGCTGTGGGAGGAGCCACAGCCCCTGAGCAAGACAGCGGCACTGCGAGAGCTGTGGATGGGAGCGGTTTTGAGGCTTTAATCATCGGCCCAGTCACAGAAAAGCCTCTGTTTGAGTGATGAGCCTCAGATGCACTCCTTTATCTGCAATGACTCTGTGGTCTTGAGCACTCCCAGTCCATCAGCTGAAtaatccatacacacacacacacgcgcaccaTTAAAAACCCCCTTTAAACACTTCCTAAAATGTCCTGTTGTGAACCATAAAACTAAACCTAATCATGGTCTAGATCTATATCTAAGCTTTGTTCCTTGGCAGATCTTCATCCAGGGTGTCACCTACTTCTGTGGTCTGTACTAAATCTAAGCAAATTCAAAATCCAtgcacacacacacacacacacaccgtgaacacac
>TU373115
GGATAGTGTTGGATCAGACTGCAGGAAGCTGTGGGAGGAGCCACAGCCCCTGAGCAAGACAGCGGCACTGCGAGAGCTGTGGATGGGAGCGGTTTTGAGGCTTTAATCATCGGCCCAGTCACAGAAAAGCCTCTGTTTGAGTGATGAGCCTCAGATGCACTCCTTTATCTGCAATGACTCTGTGGTCTTGAGCACTCCCAGTCCATCAGCTGAAtaatccatacacacacacacacacacacacacacacacacagacacaaaac
>TU373117
GGATAGTGTTGGATCAGACTGCAGGAAGCTGTGGGAGGAGCCACAGCCCCTGAGCAAGACAGCGGCACTGCGAGAGCTGTGGATGGGAGCGGTTTTGAGGCTTTAATCATCGGCCCAGTCACAGAAAAGCCTCTGTTTGAGTGATGAGCCTCAGATGCACTCCTTTATCTGCAATGACTCTGTGGTCTTGAGCACTCCCAGTCCATCAGCTGAAtaatccatacacacacacacacgcgcaccaTTAAAAACCCCCTTTAAACACTTCCTAAAATGTCCTGTTGTGAACCATAAAACTAAACCTAATCATGGTCTAGATCTATATCTAAGCTTTGTTCCTTGGCAGATCTTCATCCAGGGTGTCACCTACTTCTGTGGTCTGTACTAAATCTAAGCAAATTCAAAATCCAtgcacacacacacacacacacacacacacacacacacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU373109 False 263 lncRNA 0.53 2 5137824 5211323
TU373111 False 436 lncRNA 0.47 2 5153307 5211323
TU373112 False 275 lncRNA 0.52 2 5137824 5211323
TU373113 False 440 lncRNA 0.46 2 5166064 5211323
TU373114 False 444 lncRNA 0.47 2 5154802 5211323
TU373115 False 265 lncRNA 0.52 2 5132366 5211323
TU373117 True 448 lncRNA 0.47 2 5137824 5211323

Neighbor

gene id symbol gene type direction distance location
nmd3 nmd3 coding downstream 15132 5101590 ~ 5117234 (-)
otol1b otol1,LOC107734882 coding downstream 52728 5073164 ~ 5079638 (-)
znf407 znf407,LOC104948785 coding downstream 76148 5043496 ~ 5056218 (-)
LOC113543037 tshz1 coding downstream 103866 5018847 ~ 5028500 (-)
LOC113543211 galr1 coding downstream 248285 4868536 ~ 4884081 (-)
smc4 smc4,LOC107720450 coding upstream 16823 5228146 ~ 5249124 (-)
LOC113543027 NA coding upstream 115193 5326516 ~ 5329612 (-)
il12a NA coding upstream 159745 5371068 ~ 5376970 (-)
schip1 schip1,LOC103369651,LOC106580942,LOC104954265,LOC102193686,LOC106612913,LOC100701131,LOC107081925,LOC103148079,LOC108240933,LOC101468843,LOC107750091,LOC108424074,LOC107551285,LOC108280660 coding upstream 173234 5384557 ~ 5690974 (-)
mfsd1 mfsd1,LOC106580941 coding upstream 482341 5693664 ~ 5709552 (-)
G314692 NA non-coding downstream 331955 4798636 ~ 4800411 (-)
G314617 NA non-coding downstream 344944 4787207 ~ 4787422 (-)
G314616 NA non-coding downstream 348595 4783551 ~ 4783771 (-)
G314503 NA non-coding downstream 555034 4512018 ~ 4577332 (-)
G314458 NA non-coding downstream 605613 4517575 ~ 4526753 (-)
G315067 NA non-coding upstream 350 5211673 ~ 5211906 (-)
G315021 NA non-coding upstream 634 5211957 ~ 5216588 (-)
G315069 NA non-coding upstream 8226 5219549 ~ 5219829 (-)
G315075 NA non-coding upstream 15905 5227228 ~ 5227617 (-)
G315141 NA non-coding upstream 120571 5331894 ~ 5332153 (-)
LOC113543250 znf236 other downstream 136361 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 315195 4800480 ~ 4817171 (-)
G313817 sall3,LOC108435487 other downstream 1817274 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 2243696 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 2420201 2669218 ~ 2712165 (-)
trnat-agu_14 NA other upstream 9138 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 9620 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 10439 5221762 ~ 5221835 (-)
limk1a limk1,LOC107663742 other upstream 1381946 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 2353758 7565081 ~ 7568134 (-)

Expression


Co-expression Network