G314692


Basic Information

Item Value
gene id G314692
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4798636 ~ 4800411 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372748
acagtgcTCTGCAGAGACCGCTCCGATCCTGTGGCCATCGGCTGGCTTGTGGAGGGTGCAGGATCCTCTGCACCCACAGCTTCTGGCTGACTTGGCAAGTCCGTGACCATGTTCCCGTTCACCTGCAGATCTTTAATCGGCTTGCCACAGGGATCAGGGCTCTGGAAGATGGAGACAATTTCAGAGTATCTCCAGAATCTGCCCTTTTGAAGGAACTCAGTGACCCTTCTTCAGTACAGTGCTGCGTGTACTTCTTCTGGAGATGTCCAGGCAGACTGTACTGGGCCTTTTGGCATACATGGAACAGCAGGGTGGTCCTGTTGGGGGTTGAATGTCCCTGACCTCATGGCTTCTGTCTACACATTTCTGTCTTATAGACAACTTATAAAGTGGCTTTCCTGTGAAATTTTCTGTCTAAAACACTGAGAAAAGTCACAttctgaaagaaaaatgcaggAAGAGTGATTTTCAGTGTTTCCCTTTAAAGTTATGGGACAAATATGAGCATTACGAGTTTCTCATTCTGCAAACGACCAACCAAGGCTCCTATTTTTTTCCAAGCATGTTTGAATTGATCGAATTGCATAGTTCAACCCCTCTGTACCTAGCTGCAAGTGCAGTGATGAGAAACAGCCAACGAGAGCATGTGAGGAAATCAGATTCATCCGCTGGAacgcgcagcagatccctgaatccggTTTATCATCCTTCTGTTTGTGTGGGAGCAAGAGGGCAAAATATAAGCACAATaacaatatttctatatatgGCATAACACGACATGATTCCTGATGGCATGCGGTataagaacagttttttttttttttttttttaaactatgcaCTGTCCACATCTCCACAACCAATATTTCCTCAACATTTGctcttctttatctttttttcttgtttccctACAAAACAGTGACAAAGTCAATAGAAAGTGATAGACATATCTCATGTCTGATTCTGAGGTTTTGGAAGTCGTGTAGTGTGCACTTGGCTTAAAACGATTAACACTGTCCCAACACTGTCTCGTGTTAATGTTTGAATGTTCTGACTCGGCAAACAATTTGGTAACACCCCCTTTGAAGTTATTTCTAGACCAGGCGCAAGTATTTACTGTAAAACGAATGAAGCTTTCATTTTAGTAGTTAAActtaaatatcttaaatatctATATTGTAATATAGATGGCATCCTATCAGGACCGATCTAcaacactaacaggacaaaCACGAACCTAGACTATACATGCACCAGTCGGGGGAGGGGTGTACTGATTAGAAGGGTTGATTTGGTGGCTGTACAAGTATTAtaggacatacagtataaataccTGCTGTGttattgtgatttttatgcgaatacagatttttattttttagataattTTTTAGGAGCATATCAGAAATACAGCAATGGATAATAATTCTTGGATAGTAAGGGTTAACAGGAAAATTACGTGTTTAAtcactgatgaaataaaaatagcacttgGACATCTCTTGGACATCCAGGCAGTGTTTTGAACCCAGCTCTGTACTACTGATGGTTTTATTTTCGCGTTTTGTTACCTAAGAATTGGATTATTTATTGAAGCTGTGAGTTAACATGTGCCatcaacagtgtgtgtgtgtgtgtgtgtgtgtgtgttcattgcaAGGTCTTCCATTTCATTCGAATAACATGCTGAATGCTAAACAGTGTGTCAGTGCCTTATATTAAAGAAGAGATGAAagagtgtatgtttgtgtgtgtgtgtgtgtgtgtgtgtgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372748 True 1776 lncRNA 0.41 1 4798636 4800411

Neighbor

gene id symbol gene type direction distance location
mms22l mms22l coding downstream 59776 4716183 ~ 4738860 (-)
LOC113543015 LOC108280884 coding downstream 86448 4706554 ~ 4712188 (-)
LOC113543065 crgm2,LOC108280851,LOC108280850,LOC108259744,LOC108260578,LOC108260584,LOC108260581,LOC108259787,LOC108260664,LOC108260582 coding downstream 166020 4631747 ~ 4632616 (-)
LOC113543064 crgm2,LOC108280851,LOC108280850,LOC108258879,LOC108259744,LOC108260581,LOC108259787,LOC108260584,LOC108260664 coding downstream 170116 4627078 ~ 4628520 (-)
dnajc30b NA coding downstream 216038 4579121 ~ 4582598 (-)
faxcb faxc coding upstream 30766 4831177 ~ 4839946 (-)
coq3 coq3 coding upstream 40346 4840757 ~ 4844144 (-)
pnisr pnisr coding upstream 46478 4846889 ~ 4854797 (-)
LOC113543211 galr1 coding upstream 68125 4868536 ~ 4884081 (-)
LOC113543037 tshz1 coding upstream 218436 5018847 ~ 5028500 (-)
G314617 NA non-coding downstream 11214 4787207 ~ 4787422 (-)
G314616 NA non-coding downstream 14865 4783551 ~ 4783771 (-)
G314503 NA non-coding downstream 221304 4512018 ~ 4577332 (-)
G314458 NA non-coding downstream 271883 4517575 ~ 4526753 (-)
G314483 NA non-coding downstream 326785 4470279 ~ 4471851 (-)
G315019 NA non-coding upstream 331955 5132366 ~ 5211323 (-)
G315067 NA non-coding upstream 411262 5211673 ~ 5211906 (-)
G315021 NA non-coding upstream 411546 5211957 ~ 5216588 (-)
G315069 NA non-coding upstream 419138 5219549 ~ 5219829 (-)
G315075 NA non-coding upstream 426817 5227228 ~ 5227617 (-)
G313817 sall3,LOC108435487 other downstream 1483544 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 1909966 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 2086471 2669218 ~ 2712165 (-)
G313307 dsel,LOC108432253 other downstream 2474070 2319769 ~ 2324566 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 3453059 1272541 ~ 1345577 (-)
fbxl4 fbxl4 other upstream 69 4800480 ~ 4817171 (-)
LOC113543250 znf236 other upstream 162654 4963065 ~ 4996005 (-)
trnat-agu_14 NA other upstream 420050 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 420532 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 421351 5221762 ~ 5221835 (-)

Expression


Co-expression Network