mms22l (mms22l)


Basic Information

Item Value
gene id mms22l
gene name mms22l
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4716183 ~ 4738860 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940867.2
GCTGAGTTTGAGTCGCGATATTTGCATACGCATGCGCACTGCGCGCGCTTCCCAAGCGCGGGACTTCAGTGTTTAGATGAAAGCTGCGAGTTGTCAACATTGCTGAGTGAAATGGAGGACGATTTCAGTCAGTCCCTCACTCCACCTGTCTCTCCCTTCATGGACGAGGAGCTCGGCGAATCGTCCCTCGCTCGGCCGCCGTGCTTCTCCTGCGCTTTcgagaaaggaagagaagaagcgCAAACTCTGTCGTCAGACGGCTATGTCAGCCGAGGTGTCCTAAAGAGGTTGCTGTTGAAGTTAGATCCGGCTCCTGCAGACTTCGAAGTCGACACTGTGGATTTGTTCGGCTTCTCCTGGGTGACGGAGACGGCATTGCTGGAATCGACTCAGCTTCTGTTTGGCTTGTTCAGacaaaaagtCTTCAGGCTGGAAACTCTGGTTCAGTCTAGCTCACATGATTTTGGTCAAGCAAGTAGCCTTCATTACGAAGCAGAGGAGCTGAGGCAGCAGTGCGTGCTGTTTCTCACCTACATTAAAGTCTTTATTCACAGGTTTGTGGAGGCACCTGATCCACTGGAGGAAGAGTTCTCCCCGTCATTCTCACAGATGGAGGCGCAGTTTCCCTCCACTTTAGTGGAGCAGCTGTTCAGCATCACACTGCTCATTGGCCGACTTAAAGATTTACCGGCAAACGTCCAAAGTGCTTTCACCATCCATCACCAGGGAAAGCTTTTCCCTCCATCATGGCATTTACTGCACCTTCATTTGGACGTCCACTGGGCCATACTGGAGATCCTGCACATTTTGGGACAGAAAATGATGGGTCAAGTTGTGTATGCAAGTCAGTTTGTTGATCTAACGGGAGAAACTCTCACCAATGTCAGCCTGTTCGAAGATCACCTCAACAACCTACTGTGTGACCTTATTACTCTAGCAATGAACAAGTACAGCAAGGTGAGACCGACTGAGGCATTGATAAGTCATCATTATCAATGTGTTTGCACTAAAGAGATTTGGATTCTCCTTATCCACCTTCTGGAACACAGGAGCAAAACTCTCCACacgcagTCATTCTGGGGCTATGTGAATGCACTGCTCGACTCCATCCTGAAGGGGGCGCCATCAGGAGTTGCAACACAATGTAAAGACACGCTCGGATTCACATGGTGGCTGATCGCACACCTCGCACAGCTTGGAATGTGCAACCGTAACGGAGTGCTTCAAAGTGAGAAACAGTTGGATGACAACtggagttttgtgtgtgatCTGCTGAAGTCCAGCTGTGACGTCAAGgcaGCGGTTCAGGAGGAGCAGATGCGGATGTACGTGCACTGCTGCTTGACTCTCAGTATGGTGTGGGTACCCAGCCTTAGCGCCATCAACACACTTTGGGATTTTTTCAGCAAAAACCTGAACGGATCGTTCTCAGTACCTTGGTTAGGTGTGTCTGGATTGGCCAGTATTGGCTCCACCCCACTGGCTCTGTTGGAACAGGCCAAGAGCTGCTGTAGCCCCGCCCTGTTGAACTCCACTAATCACGCCCACCTCTATCGCTCCACCAATTCCTTCCTTATTTTCCTGCGGATGCTTGCGCTGCACCTGAAGCAGGAGAGCGGCGCCCCCTGGAGGCAGATCAAGGGCAGAATCTACTCTAAGTTCCACGAGCGTCGCATGGCTGAGCTGTCCGAGAGCGGACTACATCACTTCCTGCTCCTCTTCCTGGTTTTGTCGCTGTGCGCCGATTTGGAGGACGCCACAGGCCGCGCCTTCGATCTTTTGGCCCTGCGGTTGCCTGCGGCGACAGCAGTGATGTCATGGCGGGGTCGTTTGGCTCTGCTGCTCGGGTTTGTGGAGCGGGGTGTGGACGTGGGCGGGGCAGCCACAAGGATCTCCGCCTCCTTCAGCAGTGCTGCACGAGAGTTTTACCTTAAGACTACGCCCGTGCCGAGGAGGGCAGAGCTGTGGCGTTTAATCTCCGCCTACTTGGAGGGCGTGGGCCAGGTGTGGCAGAGCAGCGCCACCTTGTGTCTGTCTGAGGAGAAGCTGATTAATGAGGGGTTCGGCCTGCTACTACCGGCCTGTGGCGCTAAAGAGCTTGACACGGTGCTCGACTTCCTACAGATGGCACTGACACAGTTAcgGAGGGTGCAGCAGTGTTCTCAAAGTGCCAGTACAGCTCTTCCTCTCAGTGTGGTTAAAGAGCGCCACCTGGCGGTGGCTGTCACTCTGTGGACTCACTTCTTACCGTTCCTGCGCACACTGAGAATCTCACAGACTCCGCCGGAAGAGCTAGCGCACGCCGCTGCAGGTTTCACTCTGTTAGCCCTGGATTTGCCTAACTCCGCCCCTCAGGATCTTCAGCCCCGCCCACTCCTGGCCATGATTCAGTGCTTTGGCTGGGATGAGATGCTTCGACCCCTACTGGTGACACGCTACCTCAACAACCTGCTGCAGAAAGAggaactAGTGCATAAGATGAGCTCTGCTGGTGACTCAGCCcaggctctgtgtgtgagagcgtggATCCGCTGTATCGTACAACAGCATCAACACAACAACACTGACGCACACAACAGCAGAACAGACAGGACTTTAGAGGAGCAGTTAGCTGAAATGACCGCACTGATCCTCAGACTACCAGAAGTGGAGTCACTGCTTCAGAGAGCCGGACTGAACACTAACGCTGCTATGCAAGAACCTAAAGCTGCCCTGACCTTGTTTATAAAGtgtgtaggtcGTGTGTATTGTGGGCTGCAGCAGCAGACGGAGCGTGTGTCTCTGGTGTGTAAAGCGCTGGAGTATGTAGGCGACATCATGAAGTTCATCAAACCCAACCTGCTGAACAAGAGTGCAGAGGGCCTGCATATCACCTACTGGACACTTGGGTGTGTGGCAAAGCACTGGAGCCCCCTGCTGGCCACGTCTAAAGCTCAGTCCCTACTCCTGCGCATCATAGACGTCCTGCTGCTCCCTCATTCCCTGCTGCAAGATAAAGCTCCACCTCCTCAGCTGATCTCCTCTATTCGGGACACACTGCCACTCTACCTGCagGGTCTCTCTGTAGTAGTGGGAGTGTCCCAAACGCAGGTGTCGTACCTCAAGCAGCAGCTGCGTAACGTCATCACTCAGTACCTGAGCCGCTTCCTCCCAGCCACGCCCACTGTTGGAGCAGTAGCCAATCACCCGGTGCTGCTGGCTGGCTGTgaggccacacccacaccaCGAGGGGCTGCGCTGAGGAAGAACATCCTGCAGGCACTcaggGAAAACTTCCTACAGTTCAGAGGCCATGCCCCTCCTCCTCGATTGGCAGCTGTCCTCATGTTCCTATTGGAGCTCCTGAGACGTAATAATGACACTGACCCCGCCCTTCTCACTGTGCCCCTCACACAAGTGCTGCGCTGCATGATGCTTGTTAATGAACCTCAAGtGAAGAAGCTGAGTACAGAAAGTGTGCAGCTAATCGTGGAGAGATGTTCCTCTGCAGCCAGAGAGGAACCGTGCGACCAGCTTATCACAGTTCTCAGAACGTTCGTGGAGGAGAATGAGGGTGTGTATGAGCTACAGATGTACAGCGCTTTGGAGACGGTCGCTATCCTCAATCCCTTAGCTGTGTCGACTCTGATTCCAGTTCTCTCGCAGAGTTTACGCAACACAGAACAGAAGAGAGGAATCGGTAAAAACACATCTCTCAGAAACGCCTACAGGACTCTTCTGGCATTGTTGGGAGATGCTGGTCAGGCCGAAATGATCATTCTGGAAGAGGATTAAGCTGTTACCGTTTGTCTTCTGCTCTGattgtaaatattgtacataAAGTTTACTTTGTACATCTCATGTTTTGTATCTGTCTTTTTCAATAAATATGGACAAGTGTCGCAtga

Function

symbol description
mms22l Predicted to be involved in double-strand break repair via homologous recombination and replication fork processing. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be active in nuclear replication fork. Orthologous to human MMS22L (MMS22 like, DNA repair protein).

NR:

description
protein MMS22-like isoform X1

GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0042555 MCM complex cellular_component
GO:0035101 FACT complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940867.2 True 3887 mRNA 0.53 26 4716183 4738860

Neighbor

gene id symbol gene type direction distance location
LOC113543015 LOC108280884 coding downstream 3995 4706554 ~ 4712188 (-)
LOC113543065 crgm2,LOC108280851,LOC108280850,LOC108259744,LOC108260578,LOC108260584,LOC108260581,LOC108259787,LOC108260664,LOC108260582 coding downstream 83567 4631747 ~ 4632616 (-)
LOC113543064 crgm2,LOC108280851,LOC108280850,LOC108258879,LOC108259744,LOC108260581,LOC108259787,LOC108260584,LOC108260664 coding downstream 87663 4627078 ~ 4628520 (-)
dnajc30b NA coding downstream 133585 4579121 ~ 4582598 (-)
LOC113543162 mlrb,LOC108424014,LOC103022780,LOC108413922,LOC108276823,LOC107734439,LOC107577538 coding downstream 357116 4352344 ~ 4359067 (-)
faxcb faxc coding upstream 92317 4831177 ~ 4839946 (-)
coq3 coq3 coding upstream 101897 4840757 ~ 4844144 (-)
pnisr pnisr coding upstream 108029 4846889 ~ 4854797 (-)
LOC113543211 galr1 coding upstream 129676 4868536 ~ 4884081 (-)
LOC113543037 tshz1 coding upstream 279987 5018847 ~ 5028500 (-)
G314503 NA non-coding downstream 138851 4512018 ~ 4577332 (-)
G314458 NA non-coding downstream 189430 4517575 ~ 4526753 (-)
G314483 NA non-coding downstream 244332 4470279 ~ 4471851 (-)
G314462 NA non-coding downstream 289049 4418934 ~ 4427134 (-)
G314449 NA non-coding downstream 325976 4377190 ~ 4390207 (-)
G314616 NA non-coding upstream 44691 4783551 ~ 4783771 (-)
G314617 NA non-coding upstream 48347 4787207 ~ 4787422 (-)
G314692 NA non-coding upstream 59776 4798636 ~ 4800411 (-)
G315019 NA non-coding upstream 393506 5132366 ~ 5211323 (-)
G315067 NA non-coding upstream 472813 5211673 ~ 5211906 (-)
G313817 sall3,LOC108435487 other downstream 1401091 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 1827513 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 2004018 2669218 ~ 2712165 (-)
G313307 dsel,LOC108432253 other downstream 2391617 2319769 ~ 2324566 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 3370606 1272541 ~ 1345577 (-)
fbxl4 fbxl4 other upstream 61620 4800480 ~ 4817171 (-)
LOC113543250 znf236 other upstream 224205 4963065 ~ 4996005 (-)
trnat-agu_14 NA other upstream 481601 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 482083 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 482902 5221762 ~ 5221835 (-)

Expression


Co-expression Network