LOC113543162 (mlrb,LOC108424014,LOC103022780,LOC108413922,LOC108276823,LOC107734439,LOC107577538)


Basic Information

Item Value
gene id LOC113543162
gene name mlrb,LOC108424014,LOC103022780,LOC108413922,LOC108276823,LOC107734439,LOC107577538
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4352344 ~ 4359067 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941225.2
CTGGGACTCTATTGTCTCCCCAGACGTTAACTGTGTGCCTGCAGGACCTCAGCCACCATCACAATGCCACCCAAAAAGGCCAAGAAGAAGGAAGCAGCCAGCTCCAATGTGTTCACCATGTTCGAGCAGTCTCAGATTCAGGAATTCAAAGAGGCGTTCACCATTATGGACCAGAACAGAGACGGATTCATTGACAAGAATGATCTCAGAGACACTTTCGCCGCTGTAGgtcgTCTGAACGTAGGGAGTGATGAGCTTGATGACATGCTAAAGGAAGCCCCAGGTCCCATCAACTTCACAGTGTTCCTCAGCATGTTTGGCGAGAAGCTCAAAGGTACTGACCCGGAGGAGAACATTCTGAACGCCTTCAAGATCTTCGACCCAGAGGGTACTGGTGTACTGAAGGGAGATGAGATCAAGTTTTACCTGATGTCTCAAGCAGACAAATTTACAGAAGCTGAGATGAATCAGATGTTGCAGATGTTCCCTCTGGACGTTTCTGGTAATCTCGATTACAAGAATCTCTGCTATGTGATCACACATGGAGAGGAAAAGGAGCAGGAGTGAGGAGACAGGGGAGTAAACTTTGATTTGTAATCACATTCATCACTGTCATTGTCATTACGCATTGTCAGTACCTTTGTGGCTGAATATGAGCCTTGAGCTTTGAAGCCCAGAACAATGTGTATGTTGTGGTGTAACTCTGAAGATGGATAAAGACTCTCTGGAATGTACACAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K10351 MYL2; myosin regulatory light chain 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941225.2 True 739 mRNA 0.47 7 4352344 4359067

Neighbor

gene id symbol gene type direction distance location
srprb srprb coding downstream 39212 4308055 ~ 4313132 (-)
neu4 LOC108280893 coding downstream 54423 4291737 ~ 4297921 (-)
aadac LOC108280253 coding downstream 156536 4184692 ~ 4195808 (-)
LOC113543058 mbnl1,LOC108280598,LOC108424044,LOC105895776 coding downstream 239127 3996500 ~ 4113217 (-)
pcsk7 pcsk7 coding downstream 363518 3969437 ~ 3988826 (-)
dnajc30b NA coding upstream 220054 4579121 ~ 4582598 (-)
LOC113543064 crgm2,LOC108280851,LOC108280850,LOC108258879,LOC108259744,LOC108260581,LOC108259787,LOC108260584,LOC108260664 coding upstream 268011 4627078 ~ 4628520 (-)
LOC113543065 crgm2,LOC108280851,LOC108280850,LOC108259744,LOC108260578,LOC108260584,LOC108260581,LOC108259787,LOC108260664,LOC108260582 coding upstream 272680 4631747 ~ 4632616 (-)
LOC113543015 LOC108280884 coding upstream 347487 4706554 ~ 4712188 (-)
mms22l mms22l coding upstream 357116 4716183 ~ 4738860 (-)
G314367 NA non-coding downstream 52379 4299761 ~ 4299965 (-)
G314359 LOC108280160,LOC108424050 non-coding downstream 75397 4274372 ~ 4276947 (-)
G314317 NA non-coding downstream 180253 4171873 ~ 4172091 (-)
G314202 NA non-coding downstream 361934 3884704 ~ 3990410 (-)
G314449 NA non-coding upstream 18123 4377190 ~ 4390207 (-)
G314462 NA non-coding upstream 59867 4418934 ~ 4427134 (-)
G314483 NA non-coding upstream 111212 4470279 ~ 4471851 (-)
G314503 NA non-coding upstream 152951 4512018 ~ 4577332 (-)
G314458 NA non-coding upstream 158508 4517575 ~ 4526753 (-)
G313817 sall3,LOC108435487 other downstream 1037252 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 1463674 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 1640179 2669218 ~ 2712165 (-)
G313307 dsel,LOC108432253 other downstream 2027778 2319769 ~ 2324566 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 3006767 1272541 ~ 1345577 (-)
fbxl4 fbxl4 other upstream 441413 4800480 ~ 4817171 (-)
LOC113543250 znf236 other upstream 603998 4963065 ~ 4996005 (-)
trnat-agu_14 NA other upstream 861394 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 861876 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 862695 5221762 ~ 5221835 (-)

Expression


Co-expression Network