LOC113543015 (LOC108280884)


Basic Information

Item Value
gene id LOC113543015
gene name LOC108280884
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4706554 ~ 4712188 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940930.2
ttttgttcttttgttgcactcctgaggaaattATACGTAACCAAAGTCAAGATCCGTAAATGAAACCATGCAGTTTTGCATGTTATTGAGCTATAATTAGCCATGGCGCGCGCGCGGGGTAATGTTATGAGTGTTTGAGGACAGGAAGTGCAAaaccagatgagctggtttgcaGGAGGAGGAATAACAAGCAGGGtggagttagagagagagagagagagagagaatgagagagagatttacagGGAGGAGATtttagtggggaaaaaaaacagaaaaaggaacAAACACTAAAGACAATAAGAGCAGCGCGCGCATCTTTAGTCTGGAAGTTtgggttgttgttgttttgcgcCAGGTTTCCGGCCGCAGACTTGCAATAACGCACTCTGTTTCAAAAGTTTCATTCGTCTTTCAGGTATTCTGATCTGCTCCGAAATGATCCCCTCGGCTCTGAAACCCACGATGGACTCTTTCAACACCCTCATGCGCTTCTTCTCCAACCAGAAGGCCAAAATCGGATATGGTATCATGGCCATCGCGACCATCGGAGGAGAGAGGATCTTCTCGCTCTTATCCTTCCAGTGTCCGTGCAACGTCGAGCAGAACATGGTCTACGGGCTCTCGTACCTGCTCGGACCGGCGCTCGTGCTCTTCATCGTTGGGCTTTTCCTGAGCACGAGCCTGTGGCGCCTCTACACGGGCTGCTGCCTCAACCCCAGAAAGCTCTGTCCTCACAGGGCAAACTGTGTGGGCTGCTTAACTGTGCTTTTTAATGTGATTGTTGGAGCACTTGTGGCACCAATCATGTGGCTCAGCATCGCTTTGCTGAATGGCACGTTCTATGAGTGTGCGGTGAGTGGTCTGGAAGACAAGGCACTCGTGAACTGGTTTTGTAAAAATAGGACTATCACATGCAAGGACGAGCTGGCCAAAGTCTTGTGTGTACCGTCCAATATGGCGACAGAGAACTCCAAGGAGCTTCTGCGAATACTACAAGCCCAGTCTCagATCCTCGGCTGGATCCTGATCATGAGCTCTGCTTCGGCTGGTCTGATTGGCACATGTTACAAAAACTGCCGCTCTCAAGTGAGCTACCTGCAGCTCACTTTCTGGAAAGTGTACATGGAGAAGGAGGCCGAGAAGTTTGATTCGTTCACAGAGGAGTACGCCACCCGGCTGGCCGAGCGAAACCTCAAGAGCTTCTTCGAGAACAAAGACCCCGAGGCATTTCCTTTTCCAAACCACAAAGCCTGGGAGCATATCTCGACCATATACACGTATGATCGCGGTGAGCAGTATTATAGCACGCTGCAGAGATATGTGGAGAATCCTAATCGTGACTACACTCCAGAGAAAATGCCACTGGAAATGGAACACAACCTTGGATAGGCATGGACCTCAACGGCAATCAGTAAACAATGTTTTACTTATATGGGGTTGACCTGTGGTTTTAGCTTACTGACTAGCTAGCATTGGACCAAAgctagcaagaaaaaaaaacatccaaagtCTACATGAATGTGAGATTTTAAAGGTCATAGTTGCCAAAGTGTtggcaaaacattttttttttcttcaggattGGTGACAGCCATGTTAGCTGGGTCCCATTGTGATTGAACCACTTTTAAGATACTTAAATGTCCTTAAGCTTAAGCTGCCTAGATTAACCACTAACTTAAAATAACAGCATTTAAGCATATTTTAAGCATAATTAAAAGACTCAGGTCAAATGATATAATTCATGACTATTTAATGTACTTACTAGAATGTCGGCCATTTCATTGCTCCGTCCTACGAGAATCAATTCTACATTGAGTTTGCAATACGCATAACGTTACCTTtagttaaaatgacaaaaaatctGGTCTTGACCAAAATCTAGTAATATACAAAATCCggtaatatactttgacatcaCTACGTTAAGCAAACAGAAATCTAtttcaacaaaatgtttttatttaggttttatttAAGCTGTCTTTCACTGTGTAAgaaagggaatgactgtttatagttgttataacgtaagcgataacttacttttttcacattaaattaaatgaataaattacattatcAGCGAgatgttgtggtataagaggaataaaactcttcagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940930.2 True 2128 mRNA 0.44 3 4706554 4712188

Neighbor

gene id symbol gene type direction distance location
LOC113543065 crgm2,LOC108280851,LOC108280850,LOC108259744,LOC108260578,LOC108260584,LOC108260581,LOC108259787,LOC108260664,LOC108260582 coding downstream 73938 4631747 ~ 4632616 (-)
LOC113543064 crgm2,LOC108280851,LOC108280850,LOC108258879,LOC108259744,LOC108260581,LOC108259787,LOC108260584,LOC108260664 coding downstream 78034 4627078 ~ 4628520 (-)
dnajc30b NA coding downstream 123956 4579121 ~ 4582598 (-)
LOC113543162 mlrb,LOC108424014,LOC103022780,LOC108413922,LOC108276823,LOC107734439,LOC107577538 coding downstream 347487 4352344 ~ 4359067 (-)
srprb srprb coding downstream 393422 4308055 ~ 4313132 (-)
mms22l mms22l coding upstream 3995 4716183 ~ 4738860 (-)
faxcb faxc coding upstream 118989 4831177 ~ 4839946 (-)
coq3 coq3 coding upstream 128569 4840757 ~ 4844144 (-)
pnisr pnisr coding upstream 134701 4846889 ~ 4854797 (-)
LOC113543211 galr1 coding upstream 156348 4868536 ~ 4884081 (-)
G314503 NA non-coding downstream 129222 4512018 ~ 4577332 (-)
G314458 NA non-coding downstream 179801 4517575 ~ 4526753 (-)
G314483 NA non-coding downstream 234703 4470279 ~ 4471851 (-)
G314462 NA non-coding downstream 279420 4418934 ~ 4427134 (-)
G314449 NA non-coding downstream 316347 4377190 ~ 4390207 (-)
G314616 NA non-coding upstream 71363 4783551 ~ 4783771 (-)
G314617 NA non-coding upstream 75019 4787207 ~ 4787422 (-)
G314692 NA non-coding upstream 86448 4798636 ~ 4800411 (-)
G315019 NA non-coding upstream 420178 5132366 ~ 5211323 (-)
G315067 NA non-coding upstream 499485 5211673 ~ 5211906 (-)
G313817 sall3,LOC108435487 other downstream 1391462 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 1817884 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 1994389 2669218 ~ 2712165 (-)
G313307 dsel,LOC108432253 other downstream 2381988 2319769 ~ 2324566 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 3360977 1272541 ~ 1345577 (-)
fbxl4 fbxl4 other upstream 88292 4800480 ~ 4817171 (-)
LOC113543250 znf236 other upstream 250877 4963065 ~ 4996005 (-)
trnat-agu_14 NA other upstream 508273 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 508755 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 509574 5221762 ~ 5221835 (-)

Expression


Co-expression Network