LOC113543064 (crgm2,LOC108280851,LOC108280850,LOC108258879,LOC108259744,LOC108260581,LOC108259787,LOC108260584,LOC108260664)


Basic Information

Item Value
gene id LOC113543064
gene name crgm2,LOC108280851,LOC108280850,LOC108258879,LOC108259744,LOC108260581,LOC108259787,LOC108260584,LOC108260664
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4627078 ~ 4628520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941053.2
GGAAACTGCTCCAACTACCAAATCCACTGCTGTGACGAAGAACATCACCATGGCTAGGATCATCTTCTACGAGGACAGGAACTTCATGGGCCGCTCCTATGAGAGCAGCGGTGACTGTTCTGACATGTCCTCCTACCTGAGCCGCTGCCACTCTTGCAGGGTGGAGGGCGGCTGCTGGATGGTGTACGATCACCCCAACTTCATGGGAAACCAGTATTTCCTCAGGAGGGGCGAGTACGCTGACTACATGAACATGTGGGGCTGGGGCAACAACTGGATCAGGTCCTGCCGCATGATCCCAATGTACAGGGGCTCCTACAGAATGAGGATGTACGAGAGGGAGAACTTCATGGGTCAGATGATGGACGTGACTGACGACTGCGACTCCATCATGGATCGCTACCACTGGTCCGGCGGATGCCACTCGTGCCACATTATGGACGGCCACTGGCTCATGTACGAGCATCCCCACTACAGAGGCAGGATGTGGTACTTCAGGCCCGGAGAGTACCGCAGCTTCAGGGACATGATGGGAATGAGCGGAATGAGGTTCATGAGCATGAGGCGCATCATGGATTCCTGgtattaaacaaatcaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941053.2 True 600 mRNA 0.54 3 4627078 4628520

Neighbor

gene id symbol gene type direction distance location
dnajc30b NA coding downstream 44480 4579121 ~ 4582598 (-)
LOC113543162 mlrb,LOC108424014,LOC103022780,LOC108413922,LOC108276823,LOC107734439,LOC107577538 coding downstream 268011 4352344 ~ 4359067 (-)
srprb srprb coding downstream 313946 4308055 ~ 4313132 (-)
neu4 LOC108280893 coding downstream 329157 4291737 ~ 4297921 (-)
aadac LOC108280253 coding downstream 431270 4184692 ~ 4195808 (-)
LOC113543065 crgm2,LOC108280851,LOC108280850,LOC108259744,LOC108260578,LOC108260584,LOC108260581,LOC108259787,LOC108260664,LOC108260582 coding upstream 3227 4631747 ~ 4632616 (-)
LOC113543015 LOC108280884 coding upstream 78034 4706554 ~ 4712188 (-)
mms22l mms22l coding upstream 87663 4716183 ~ 4738860 (-)
faxcb faxc coding upstream 202657 4831177 ~ 4839946 (-)
coq3 coq3 coding upstream 212237 4840757 ~ 4844144 (-)
G314503 NA non-coding downstream 49746 4512018 ~ 4577332 (-)
G314458 NA non-coding downstream 100325 4517575 ~ 4526753 (-)
G314483 NA non-coding downstream 155227 4470279 ~ 4471851 (-)
G314462 NA non-coding downstream 199944 4418934 ~ 4427134 (-)
G314449 NA non-coding downstream 236871 4377190 ~ 4390207 (-)
G314616 NA non-coding upstream 155031 4783551 ~ 4783771 (-)
G314617 NA non-coding upstream 158687 4787207 ~ 4787422 (-)
G314692 NA non-coding upstream 170116 4798636 ~ 4800411 (-)
G315019 NA non-coding upstream 503846 5132366 ~ 5211323 (-)
G315067 NA non-coding upstream 583153 5211673 ~ 5211906 (-)
G313817 sall3,LOC108435487 other downstream 1311986 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 1738408 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 1914913 2669218 ~ 2712165 (-)
G313307 dsel,LOC108432253 other downstream 2302512 2319769 ~ 2324566 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 3281501 1272541 ~ 1345577 (-)
fbxl4 fbxl4 other upstream 171960 4800480 ~ 4817171 (-)
LOC113543250 znf236 other upstream 334545 4963065 ~ 4996005 (-)
trnat-agu_14 NA other upstream 591941 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 592423 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 593242 5221762 ~ 5221835 (-)

Expression


Co-expression Network