G314458


Basic Information

Item Value
gene id G314458
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4517575 ~ 4526753 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372478
ATGTCAATcataaatttgtattttatgatgtaGACATCACTTCCATGTTACTAGCCACCAAAATGTGTGTCCTTGTACTTAAAATGTGTGCGTCGGAGAAGGGAATAAATAAAGGGACGGACCACAAGCCATCTGTGTTTGTATAAAAGATATTTACTTCAATTATCACACCTAGGGTGctagtgaataataataatcataataacaataataatacattgtgAAGATTTCTTACAGTGATATTGCTTCTCCATATTGTATAAGGGACTGTCTTACAGTGCTGAGAACAGACTACATGACACACTAAAAAAATacggaaaaaaaaccccaacagagatcagaggaaaaagaatgtgaaattaaatccCAAACCTAACACGAGGCGAGGTTCGGAGGTGAGCGGAGAGAGGATAAAGGCAGTACAAGTTTCAAATGCTCATGCAGACTGACGTGACGAGgtcacactgaaacacacaggtGGAGTTCGGGAAGATCGCTTATTCTTTTTAAGTGTCACAATAAAGTCAAGGATCGTGATTCAGCGGGTCTACGTTCAGAGGCATGATGGGATTGCTTTGCAGAATCAGTCTATTCGAGTCTATGGCACCATATCTAGTGGAAAGTatgaggaacaaaacacacaaacggCAATCACTTGTataaaaacagagcaaaacTGAAAGTCAGTGAGCATCTTGAacgctccacacacacatgaccTAAAGCCTAGTACTGACTCATGAGTTTGgggcatgtgtttgtgtgtatttgtgtgtgtgtgtgcacgtgtgtgttaGCACCCAAACTGGAGCCAGACTAACAATTCTCGCCTGTGGTCACACTCTCCTGGATACAAACCTCAAATATGGGTGTTTAGTCAAGATAAGCGCTAATTAGAGCTTGAGAGAAAGAACGCCGAGACACGTCAGCGTGCTCTTACTCAGACGCCTGACTGTCTCAAAACTTCAATGTGAAGTTACAATTAGGTGATGACAAGTGAAGTTAAGAGCTGAGACAGATCAAtagggtgagagagaaagtaaaatgccaaaaaacacaaaaaagtataTACACATCCTACCATACAAAACCACGTTGAGACACACAGACCTCAACAGAGTCTCAGGGAACGTCTGACATAATCTTAGTATTTGGCATGATCCGTATCCATCCCACAAAAATTCGTCCGACCTTCAAAGTGTTTCTCTCGAAGGTCTTCTCCATATCATGATCTGATAAAGTTTGTACATCTTATTACAGATACTATACATAGAAAGTAAGCGCgtcgttatttttttttaatcattatttttttttggactgtgtGCACGCCTTAAACCCGTTCGTAGTGAGTGCTTATCAAATGCTAgtggacaaaataaaaacatttccccGTAAGTAATATACGATATACGTGAGAGGGGCTTTGAGGCCTCTGGCACTTTAAGGCTGGGTGTGGGTGTGGCCCCAAATCCCCCGCcccctcttttttttttttttttttttttttttttttttgtcctttagAGTCAATAGACTGTGCAATCTCTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372478 True 1553 lncRNA 0.40 3 4517575 4526753

Neighbor

gene id symbol gene type direction distance location
LOC113543162 mlrb,LOC108424014,LOC103022780,LOC108413922,LOC108276823,LOC107734439,LOC107577538 coding downstream 158508 4352344 ~ 4359067 (-)
srprb srprb coding downstream 204443 4308055 ~ 4313132 (-)
neu4 LOC108280893 coding downstream 219654 4291737 ~ 4297921 (-)
aadac LOC108280253 coding downstream 321767 4184692 ~ 4195808 (-)
LOC113543058 mbnl1,LOC108280598,LOC108424044,LOC105895776 coding downstream 404358 3996500 ~ 4113217 (-)
dnajc30b NA coding upstream 52368 4579121 ~ 4582598 (-)
LOC113543064 crgm2,LOC108280851,LOC108280850,LOC108258879,LOC108259744,LOC108260581,LOC108259787,LOC108260584,LOC108260664 coding upstream 100325 4627078 ~ 4628520 (-)
LOC113543065 crgm2,LOC108280851,LOC108280850,LOC108259744,LOC108260578,LOC108260584,LOC108260581,LOC108259787,LOC108260664,LOC108260582 coding upstream 104994 4631747 ~ 4632616 (-)
LOC113543015 LOC108280884 coding upstream 179801 4706554 ~ 4712188 (-)
mms22l mms22l coding upstream 189430 4716183 ~ 4738860 (-)
G314483 NA non-coding downstream 45724 4470279 ~ 4471851 (-)
G314462 NA non-coding downstream 90441 4418934 ~ 4427134 (-)
G314449 NA non-coding downstream 127368 4377190 ~ 4390207 (-)
G314367 NA non-coding downstream 217610 4299761 ~ 4299965 (-)
G314359 LOC108280160,LOC108424050 non-coding downstream 240628 4274372 ~ 4276947 (-)
G314616 NA non-coding upstream 256798 4783551 ~ 4783771 (-)
G314617 NA non-coding upstream 260454 4787207 ~ 4787422 (-)
G314692 NA non-coding upstream 271883 4798636 ~ 4800411 (-)
G315019 NA non-coding upstream 605613 5132366 ~ 5211323 (-)
G315067 NA non-coding upstream 684920 5211673 ~ 5211906 (-)
G313817 sall3,LOC108435487 other downstream 1202483 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 1628905 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 1805410 2669218 ~ 2712165 (-)
G313307 dsel,LOC108432253 other downstream 2193009 2319769 ~ 2324566 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 3171998 1272541 ~ 1345577 (-)
fbxl4 fbxl4 other upstream 273727 4800480 ~ 4817171 (-)
LOC113543250 znf236 other upstream 436312 4963065 ~ 4996005 (-)
trnat-agu_14 NA other upstream 693708 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 694190 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 695009 5221762 ~ 5221835 (-)

Expression


Co-expression Network