znf407 (znf407,LOC104948785)


Basic Information

Item Value
gene id znf407
gene name znf407,LOC104948785
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5043496 ~ 5056218 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941332.2
ATTTCCGGCCCCTAATACCCCGGACTTGGGCGTGTGACGTCACGAGCACACTACGGAACGCCGCTGGTGACTAAGATCAGAAAGCGCGGACAGAGTGAAACGGGAATTATTTGAGTTGCTTTGTGAAATGGTTAATTAAAGCTGAAGAAATGGATTGTTCAAAGAGGAATTTACGATCAgggaaggagaagagagaggaacGGCCTGAGAATAAAGACGGACAAGCTCTCCCTGAATGCACTGGCGCTGTAGATAATGGTGAAAATGAAGGAACTCTGAGTCAGTGTGAAGGTGCACACAATGCCTCTGTAGCCTCTTCAGAGGAGAATAACAGCCGTGCGTGTCGTGAGTGTGATTTCGTGGCTAAAACTCCTACTGCTCTGAAAATCCACTGCAGGAGGAAACACAGTAGCTTGCACGCCGAGGCGACGGGTACGACAGGTACAGAGGAAACACGCACAGCTGAAAATATTGCAGAGGAGATGCCTCCTACAGATCAACCGAGATCTACAGTGGCCCCTACAGAGCAGCTGAGCACTGACTCACCCCCTGTAGACCAGCTCAGCACTGATGAACCCCCTATAGACCATCTCAGCACTGACGCACCCCCTATAGAGCAGCCCAGCTCTGCAGCACACTCTATAGACCAGCTCAGCCCTGGCGTACCCCCTATAGACCAGCTTAACTCTGGCGTACCCCCTATAGACCAGCTCAACTCTGGTGTACCCTCTATAGACCAGCTCAGCCCTGGCGTACCCCCTGTAGACCAGCTCAACTCTGGTGTACCCCCTATAGACCAGCTCAACTCTGGTGTACCCCCTATAGACCAGCTCAACTCTGGTGTACCCTCTATAGACCAGCTCAACTCTGCTGTACCCCCTATAGACCAGCTCAACTCTGGTGTACCCTCTATAGACCAGCTCAGTGCTGGAGCACAGCGTTTTGAGCGTCTGTACTGCAGGTGCTGCAGTTTTTACACCTGCACAGCAGAGGAGATGAACGCACACCTGAGCGATGAGTCCCACCGAAACTTGGCGATGGAGAAAAACATTGGCCCGCTGTTTGAGCAGTGTGTTGAAAAAGTGCTTGTCATTCTGTCAGACGAACAAAAACATAGAGATGAGCAGAATGAACATAATGAGAACATCAGTGAAGATGTCAGTGAGGATGTTCGTGAGACGGAATCAGCTGAACACACTTTAGCAGAGTTAGTCGGGGCTAGCGCTTCTCACAAACGAAAACGCGGAAGGCCCAAGTCGTCTCAGGTAATGAGCTGCAGTCACTGCGGCCTCGTGGCCTCCAATCCCACAAACCTTAGTGTCCACATCCGCCGCAAACACAGCCGCCTGTACAGCTTCCACTGCAAACTGTGCAACTACTCCTGCGTGACCAAAGGAGACATGGACCGGCACTGCGAAACCAAAAAGCACATTAAACGAGTGCAGAGCGACGGCGATGGGCAGGAGGCAGTCATCATGCTAAATGCTGAGCAGGCAGCTCAGACCGGCGAGGCAGGGCCAGCCGAGAAAACACACGATGCACCGAATGCTGCACAGCAGGAAACACCAAATGtagaggaggaaggagagacagagggaacgGGAAGTGACGTTCCCTGTAAAAAGCCCAAGTACGACTCAGTTTACTCATGCGAACACTGTTACTTTGTTGCGCATTCTGCGCTTTCTCTAGCCCTGCACGTGCGCCGCAAACACACGCGGGATTTCGAGTTTGTGTGTCTGGCATGCAGTTATTACGCAGTGACACGCAGAGAAATGTCACGTCACACTGCAACCGAGAAACACAAACTCAAACGCCAGAGATACCTACAGAAACggcacaacacacaccaacaagaCAAGAATGTGGATAAACACAGCGAGAACACAAGCCAACTTGCTGAAAATGCAAACCAACAATCAGATAGCACAGACAAAAACATAGaaaacacacatgaaaataCTGACAACTCGCACCCACACACTGAGACCAAACCCCAATTCTGTGACAACAAGCAGCAAAACACCAAAACCTTGAACCAGAACACTGATCCAGAGCCAGACTCTGGTGGTAACGACGGTTTGAATAACGATGCAGCAAAAGCCACAGCAGCCGGAAAAGGAAGTGCAGGTGAGGAAGAGCTGAATATTAACCAACAGCTGAAGTCCAGTGAAGATACAAATGGCCCTAAAGATTCATTAGAGTTCCCCGAACCATCAAATAATGAAGAGGGTGAGGAGGAATACAataatggtggtgatgatgatgatgatgatgatgataataatgatgatgaagaagaagaggaggacaTGTGTGAGACGACTGCTGAAAGTCCATCTAGTGAGAGGCGTGTGTTCAGAGCAACTGCGTTTGATGAGTGCGTCTTTTCCTTGAAAGCGCCGACAGATGGACTGTGCAATGAAGATGATGGAGAGTCATATAAATCCCTCAATCAGGCcgcaaaaatgctaaaaatgtcAGAGGGACATGATGTGAGCACACGGGTCCGGTGTGATGACTGCGGGTTCTTGGCAGAGGGACTCAGCGGCCTGAACGTCCACATCACGATGAAACACTCATCGAAGGAGAAGCACTTTCACTGCCTGCTGTGCGGGAAGTCCTTCCACTCGGACAGCAGCCTGCAGCAGCACCTAAGCAGCTCGGCACACCTACGGACGGAGCGCAACAGCGTGGATGAGCGGCCTGATGGAGGCGCCGCCTTCCGGTGTGTGCGCTGTAATGAGCCCTGCAACTCAGAGCAAGAACTTTTCGTTCACATCAAAGAGAAACACGAGGAGCTGCTGCGTGAGGTGAATAAGTATGTAATGGAGGACACAGAGCAGATCAACcgtgaaagagaagaaaaccCTGGAAACGTGTGTAAATACTGTGGCAAGGTGTGCAAGAGCAGCAACTCCATGGCCTTCCTCGCGCATGtccgcacacacacagGTTCAAAACCATTTATGTGTAAGATCTGTAATTTTGCAACGGCGCAACTCGGAGATGCCAGAAATCACGTAAAGAGACACCTCGGCATGAGGGAGTACAAATGTCATCTCTGTGGGTGGGCTTTTGTGATGAAGAAacatctgaacacacacttgCTGGGAAAACATGGACTAGGCCAGCCAAAAgagaggaAGTATGATTGTGAATTGTGTGACCGGAGTTTTAGTGAGAAGTGGGCCCTTAATAACCACATGAAGCTTCACACTGGAGACAAACCCTTTAAGTGCCCTTGGTCATCTTGTCACTATgcctttctcacacactcagccaTGAAGGACCactacaggacacacacaggTGAAAAGTCATTTCTGTGTGATCTCTGTGGTTTTGCTGGTGGAACTCGACACGCTCTCACTAAACACCGGCGCcaacacacagGTGAGCGTCCATTCCGTTGTGATCTCTGCAGTTTTGCCTCGACCACTCAGTCTCATTTGACCCGACACAAACgcgttcacacaggagagaaaccatACCGCTGCCCCTGGTGTGACTACAGgtCAAACTGTGCAGAGAATATCCGTAAGCACATCCTCCACACAGGGAAACATGAGGGTGTGATGATGTACAACTGCCCTCGCTGTGATTTCTGTACCAATTCACCATCTGAGTTCCGTAACCACCTTAAAGACAAACACCGGGACATTGAGAACCCTGACCTCGCTTACCTTCATGCAGGAATCGTGTCGAAGTCATTCGAGTGTCGGCTGAAAGGGCAGGGGTCATCATACGTGGAGGCCGATGCCCCCTTCACACCAGACGAGGGCCGTTTAGGAGCTGAAACACTGCAGCAAGTCATCATCATCCAGGGATACGGAGAGGAGGCGGAGCTACAGGGAACAGAGATGGAGGAGGCCGAGCTGGAGGAATCGGCAGCCGCTACTCTGCAGACGTTGGCCATGTCCTCCGTCAATGCCGAGCTGCTGCAGGTTACGCAGGATGGATGCATTattccctacacacacaaaaactatGTCCTGGTTGAGTCGTCAGGCTCAGGGGTGGAGCAAACATTGCAGAGGGCAGAGCAAACATCACATGAAACCAATCAGGAAGGGGCGGGCCCCTCTACAGCGCTAGATGCTCTGCTGTGCGCAGTGTCAGAGATCGACCAGCAGGATGGTGCTGCTCAGCAAGACATCAGAACCACCACTGAACAACAAGCACACGCCCAGGGGGAAGGGCAGGAGGCAGTGCAAGTTTACGGGGAGGTTGTACAGGTGTTGGGCCACGCCCATGAGGAAGTCCTACAGTTTGCTGCCAGTCAACTGATGATGAGAGAAGGGTTAACACAAGTGATTGTGAACGATGAGGGAACGCATTACATTGTGACAGAGGTGGCTGACAGCACTGTATATACGCAGAGTGAGGGGGCGGAGTCTGGGCAGGAGGTAGGGCTTGTAGATGATGCAGGAAACCAGCCCAGTGAGGCTTCAGTCACATATGAACCAGTCAGCCTTAAACAAGAAGCTCAGGAATGATTGTGGAAGGGCTGAAGAGCTTAGCCCCACCCCTTTTGCCATATGATACTTCTGGCTCCACCCATTATTTACATAACTAAAAGTACAGCTACTGAACCTGCTATGGTGTGATGTAGaggattatattattattattattattattttattatttctaggtattattattaaaattaattttgtttcagAGGAATGTGTGACCAGTGTAGATTACATAGATGTTTTCCTAGCTAAAGCATAAAGTATCAATAAATGCGAATGCATAAATGTGACATTTAGGTTTACAGACTGCAAATTTACAGTCAGATTTGTAAATCTGCAATGTAAAAAAGGTACACTTCTTATATTACAGCTATGAATCttattttacagctttacaacATTACAGCACTACTTTTACAAAACTGGTGGATATGACGGGGATTTGTGGATAGCTCCAGAGAGCCAAGGGGGTGGGGTCAAATTCAAAACTCCAGAGTCGATGAAGTGTGACCAACTGGATAACTCTAGAGAGCTGAGGCCATGTGTAGAGCTTCAGAGAGCTAACCTGATTGGGGCAGAGGGCAGGGCCAAGTGGATAGTTTGAGTGAGCCAAGGGGGTGGAGCCAGATGCCAAAGCACTGAGGAGGCAGGGCTAAAACACAAACCAATGAATTATAGATTTGTGTtttgataaaaatgaaagattacAGTGTTGCATTCATGTACAATCAGCTTTGTGAGGAGCTTAATCCGATTTACAGTTGTCACCTGAGTTCAGATCAGGAGAGTAACACACGTCTCACACATACAGACCACGTTGAAACTCTTCTGTAGATCAGATTCAGTTTTTCCTGCTctgttttgtagatttttttgaAATGCCTGATAGCGAATGGTTAAATGAAACACACATTTGTTAATTTAACTGAATTTcaa

Function

symbol description
znf407 Predicted to enable metal ion binding activity. Orthologous to human ZNF407 (zinc finger protein 407).

NR:

description
PREDICTED: zinc finger protein 407-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941332.2 True 5417 mRNA 0.49 9 5043496 5056218

Neighbor

gene id symbol gene type direction distance location
LOC113543037 tshz1 coding downstream 14996 5018847 ~ 5028500 (-)
LOC113543211 galr1 coding downstream 159415 4868536 ~ 4884081 (-)
pnisr pnisr coding downstream 188699 4846889 ~ 4854797 (-)
coq3 coq3 coding downstream 199352 4840757 ~ 4844144 (-)
faxcb faxc coding downstream 203550 4831177 ~ 4839946 (-)
otol1b otol1,LOC107734882 coding upstream 16946 5073164 ~ 5079638 (-)
nmd3 nmd3 coding upstream 45372 5101590 ~ 5117234 (-)
smc4 smc4,LOC107720450 coding upstream 171928 5228146 ~ 5249124 (-)
LOC113543027 NA coding upstream 270298 5326516 ~ 5329612 (-)
il12a NA coding upstream 314850 5371068 ~ 5376970 (-)
G314692 NA non-coding downstream 243085 4798636 ~ 4800411 (-)
G314617 NA non-coding downstream 256074 4787207 ~ 4787422 (-)
G314616 NA non-coding downstream 259725 4783551 ~ 4783771 (-)
G314503 NA non-coding downstream 466164 4512018 ~ 4577332 (-)
G315019 NA non-coding upstream 76148 5132366 ~ 5211323 (-)
G315067 NA non-coding upstream 155455 5211673 ~ 5211906 (-)
G315021 NA non-coding upstream 155739 5211957 ~ 5216588 (-)
G315069 NA non-coding upstream 163331 5219549 ~ 5219829 (-)
G315075 NA non-coding upstream 171010 5227228 ~ 5227617 (-)
LOC113543250 znf236 other downstream 47491 4963065 ~ 4996005 (-)
fbxl4 fbxl4 other downstream 226325 4800480 ~ 4817171 (-)
G313817 sall3,LOC108435487 other downstream 1728404 3313304 ~ 3315092 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other downstream 2154826 2878484 ~ 2888670 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other downstream 2331331 2669218 ~ 2712165 (-)
trnat-agu_14 NA other upstream 164243 5220461 ~ 5220534 (-)
trnat-agu_15 NA other upstream 164725 5220943 ~ 5221016 (-)
trnat-agu_16 NA other upstream 165544 5221762 ~ 5221835 (-)
limk1a limk1,LOC107663742 other upstream 1537051 6593269 ~ 6649395 (-)
rps28 rps28 other upstream 2508863 7565081 ~ 7568134 (-)

Expression


Co-expression Network