RNA id: TU371136


Basic Information

Item Value
RNA id TU371136
length 4798
RNA type TUCP
GC content 0.46
exon number 1
gene id G313307
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2319769 ~ 2324566 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGCATTTATACAAATAGCAATTCCATTTATTTCATACAAACACATATCTTTTGTACTCAAGTGTGTCCATGACAGTCCCACACACATGTTCTATAAGTCTAATCTGATCAGGAGCCATATTTTCTCTCCATACATTAATTTTTGCAGGTGATATATCCCCTTCATAGACTAGATGATACAGATTTGTGGATGTAGCAAATGCGAGCTGGTTTATGGCAGCTGGAGCAACTGGCACACCAATAAACCTGTGTATCCTTTCTGCAGTATCCTCAGGAAAGTTCACAATATCCTCAAATTTCACCTGAAGGTAGGTGTGTGAGGGCAAGTCCGTGCTCGCTCTGAGGCTGGCGGAAGtgtgagcaagccagagatgagCTAGCAAGAGCACTGGGTTAGCAGCTGGCTGAGCAAGGATCTCTCGCAATGGCTGAAATGCTGCGTCAAACTGCGTGCAGGTCTGTCCTGCCCTATCGCCACCCTGGTTCAGAATGTTGAGCAAGTGTTTTCTAATGTTTCTGCTGGCATAAAGGCTTGGCTTGCTGTTGTAGAGCATCATATAGATCCATGCCCTTGGGTCACGCACTACTTGAACAGATCGCAACGAGCGTCCAATGACTTCTTGAACAAACGGGAGTTTTAAGGACCAGCTCCCGCTCCGAAGGTTCAGCACAGGGCAGGCGTTCGGGAAGTTCGACAAGTGCTGCCTCAACTCCTTGATATACTCCACCTCCCTCGATGTAGTCCTCCTGTCTCTGGTCTCGCTCGTCTCCATCAGGAGCTTCCGCCTCTTCTTCGTTCCCTGAGCTCTGCCCTGATTCCCCTGTCTCGATACTGCTCTTGTAGAGCTGAATGTTCTGCAGGTGCAGTCTGATGCTATGCACCATTGAATGGAACCATCCTTGAATGGCTTGAAACTTTCCGCTCTGGGCATCCGCTCTGGACCACTCACAAGCGTCCGTGAAAGAGTCAGGAGAAAAACTGGTCTCTGGAATACGGAGGTATGTGGAGGGAATACTGAGATACACAAAGTCAGAACTGTTGTCGAAAAGGGGTTGAAGGATCTCAGCTCCAGAGCCGGGAAGAGAGGTGATGATTATGAACGGAAGGGGCTCTGGGTTGTGATCAAGAGGGAAGGTGGATCGAGTGACGGCTTCCTCAGAGACACGGAGGTCCCTCCACATGATGCCACACAGCACCTCCTGACAACGATGAGATGTTACCAAGAGTTCCAACACCCAGAAAAGCAGCACTGAAATAATTGTGCAGCGGATAAGTTTACGGGAGGAAACATTAAACTTTCTCTTTATGGTCAAAACTGCGATGGCAAAACACAGAATCCACACTGCAATGACATTGATCATGAAACCGAGGTTAAATGTGGAGTCTTTTTTCAGTTGGCTGGGTAAAACCTGAACTCCCTGACCAAAATGAATTATCTTGTGTTTATTCTCTGCTTTTGCAAATCCTGCAAAGCCTAAGTAGCTGTGCCTGGCACCAATATCTTTGTAGTTTGTTGCTATGGACACGGTAGTCTCTGTGTCATTCAGGGTAACTGACAGTTTAACTCCATTTTTACTGTTGTCAACGAACCTGCAGTCTGATACTTTGACAAAAGGGCCGTGCATTAGGTAAGCCACCCTGCTGACTACACTGTCCATGGAAAAAGTAACATTTATGAATTGCGTCCACCTTTTTTTGAACTCTGCAACCTGTTCTACTTCTTGTATCCTGCCAACAGGACTGACTCCCTGACTGTCAAACCAAAACATCTCATAATGGGCGTCCCATACATCCATCAGAGCTCCACTGTACTTATTCAAAGACCTGTGGGGCACATATCTCAGGTCAATGTCAAGATTGTGGAAAAAGGCACTAAACGACATTAGGGGAGACTTTTCATGCTTTTCAACGTGATCTAACACTAATAAGGTTTGGGAGTTGAGCAGCACAAGGGCTCGATAAACACTCTTCAGCTTCATAGCGGACGAATAAGCTGACACGGCTTCACCACTAACAAACATAGTGTCCTGGTGTGAAGACGCTGCAATGACCTCACCAGCACTGTCTCCCACTTCCTTTTCTCCCCATTTTAACCATTTGGAACATTCCCCTAGCTGCCCCTCCCATGGTGCATTGCACTGGCTAGTGGGGGATGGTGCAAATACCAAGACGTTGTTAAGATAGCTGTATTTTGGACCATACAAAGCTTCAGAGACAAACACTTGTCCATTTGGTGCAAAAGTGAACGAGTTCTGATCCGGGTGTTCATGACCCGGGTTGAAGTTAGTCCAGCCATCGACCCAGGTATAAGGCTTAGCATGAACGATGTCATACACTGCTCGCCCACCTAACTTCCcagatttaaaagaaacaaaagtgtTGTCCTGCCCCGAAGGCAACCCTGCGCCGTATGTCACCACCCCCCAGTttgaaaaaacatgcatgtctGCTTTCCCAAAATCAGGCGGTGGCTGAAGAGTGAGCTCTGAGTCATACCAGATAAACTCAGTGTGTAATGTAGCCCAACGCTGCGCCACAGACGGCATCATGGGCCCATCCTTGGGCCGACACTTTCTGATCTGCTGCGCCAGCCAGTTTCCTGAGCCATTCCTGAGCACAAATGAGTCCAGGAACACCAGCTGACTCTCTGGCCCATAGAACCAGTTGTAGTTGGAATCAGCGATGCCCACAGTTCTTTGAAAACCAGGGAGCACGGTGGCGTAGTAGAACATGAAGTGAGCTCTCAGCCAGTTGTTATTCTTGTTGTCTATTTCAAAATGACGTGACGCTAAGAAAACGTACTGAGTGATGGATTTGGCTGTGTAGCTGCCATACGCTACGCCTTCATCTAGGGAACCATCTACGATATGATTCAAGAGGAACATGGTCTTTTCCATGTAGTTCACAGCTACCTGCTTCCACATCATGGTTTCACGGTCTTTGTGTACACCAGTTACGATAGCTCCTGTAAGGATGGCTAGTATGTTTGTAGTCTGGTGGTTCTGTAGAAACTGCCGGCCCCAACCTCTATGTTTGGACAGTTCATAAAGTTCCGCTGTGACGGCACGTATCTTCTTAAGGTACTGAACCTTTCGCTGGGTGTCCAGATAGGTATAAATGAAGTCATAAGCTGTAGCGAAGCCAGTGAGGGAATGGGATATTGGAACCTCATCATTTGGAGCGCTAGTCACAATCCAGTCGGGATATTCTGCCATACGATCcatgtatttaattaaaaactggaATGCGGCGCTGTCTTCGGGCTGGAGTAGACAGTACAGCGCAAGTGGTGGAAGGTTGTTTCCGTAAATCTCGTTccatttctttgcaaattcctcATGGTTCATGGGTGGCAGGTAGAGCGTCGGGCTGTCAAGCATGGCCATCACTGCATTTCGTATAACTTTAAATATGTGTCCGTGCGTGCTGGCAGCTTTCTTTTTCAGCCGGCGCACTTCTGTCAGGTCGAAATAAAGGTTGGGGTGGACGTTTGATGGCATGTGAAATCCTCGTTCTGTGGTGGCGTTGGTGCCTGTATGGAAATCAGCTCGCTCGTCATGATCGCTGACTGTGCCATATTTGCCTGAGGGGTCAAATATCCCAGAGAAGGAAAATCCCAAATTCACAAGACACAGCAGAAGCGCAGACTTCACTATGCATACGGCCATGATCTAAAAGACAgatgtgggattttttttcctttccctttGAAAAACGCTCCTccttaacagaaaaaaaaaagtgcttgtaATTTCTACTCACATCTAGGGCAATTCCAGGAGATTAATCATGCTTTCAGGAAGGAGGAATTTCACATGGAGTGTTTGGGTTCTTGCCAAGTTCTTGATCAAATCCACTGTTCTAAAGTCATAAGGAGGAAAAAGTTTTTGTGGTTAAAATTGACAGCTTTAGGTAGACCACCACCAATCCACCAGgtttctgaagactttcttcATTCTAGATCATGCGAACATGACACAGTATCAGTCCTGAACACTGCTTCTGAAAGAGAGCTTCTGCAATGCATGCATCATCCATGACTAAACATGCCCATGTTCTTTCCTATCTCTCTTGTTGAATCCTTTCCATTTGACACCACAGGTCCTTCACTTTCCTTTGGGAATCTCTTCCACGCCTTGTCTCCATGGAGTCTGTAAAAACCGTGTTATGTCCTGTGCAGAAGATAAATATGCGCCGGTAAAGTTGCTTCTCAGAGAGATCACGTTACTGTTTTGCGTGCACAGCTCTCTGTTGCCTACCACAGCTCTGTGATCACATCTGATTTCGTTCTGCGCATGCGCGGCAACAAGtctcttcatttttctttataaatcgCTTTACCTCCATTTCCTGAGCCGCATTTGCACTCGAGACGTGTCAGAACACGATTAGCTGCCTCAAACGACCAAAAACAAGGGCGAAATCCCAAAACAGCCGTCCTAACAGCAGAAAGAGGGATGATGGCGAGTGATGGCGAGTGAAACCCGGAAGTTACGTACAGCGTAACTGTAGACTGATGCATCTGTTATTAAACGCGAGATTCTTTAAACAGCTTTTTATCAAAGCAAATCATTAGCTGTTTAGTCGCTCGCTATTTTAATAGCAATTCTATTCTACTGGTATTGATTCTTCCTCAAAACCGTGCGGTTGTTTCCTGTCGATAGGTGGCGCGTGCATACCGGAAATGCAAAACAAGTCCTCGTGACCAATGCGTTTCTGATCtggatgaatttattttattcttatattttaAAAGGTTGCGTCGTCATTTGTAAATAACATCACACAAAATTTca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580305.1 lncRNA downstream 61520 2252897 ~ 2258249 (-) True LOC117599961
XR_004580303.1 lncRNA downstream 67163 2248660 ~ 2252606 (-) False LOC117599960
XR_004580304.1 lncRNA downstream 67163 2248660 ~ 2252606 (-) True LOC117599960
XR_003404404.2 lncRNA downstream 139114 2176465 ~ 2180655 (-) True LOC113543303
TU371010 lncRNA downstream 193389 2125894 ~ 2126380 (-) True G313198
TU371171 lncRNA upstream 96502 2421068 ~ 2421267 (-) True G313339
TU371494 lncRNA upstream 344668 2669234 ~ 2670994 (-) False fbxl7
TU371495 lncRNA upstream 380691 2705257 ~ 2712142 (-) False fbxl7
TU371524 lncRNA upstream 388426 2712992 ~ 2713382 (-) True G313637
TU371538 lncRNA upstream 410410 2734976 ~ 2735177 (-) True G313647
XM_026941099.2 mRNA downstream 15369 2275585 ~ 2304400 (-) True tesk2
XM_026940819.2 mRNA downstream 51573 2264673 ~ 2268196 (-) True si:ch73-382f3.1
XM_026940818.2 mRNA downstream 51587 2264673 ~ 2268182 (-) False si:ch73-382f3.1
XM_026941304.2 mRNA downstream 57175 2259143 ~ 2262594 (-) False selenop2
XM_026941303.2 mRNA downstream 57178 2259143 ~ 2262591 (-) True selenop2
XM_026941430.2 mRNA upstream 97438 2422004 ~ 2510072 (-) True cdh7a
XM_034314888.1 mRNA upstream 337461 2662027 ~ 2667316 (-) False impa1
XM_034314887.1 mRNA upstream 337461 2662027 ~ 2667316 (-) True impa1
XM_034297783.1 mRNA upstream 344652 2669218 ~ 2712165 (-) True fbxl7
XM_034297784.1 mRNA upstream 344652 2669218 ~ 2705807 (-) False fbxl7
XR_004576906.1 other downstream 1268171 1005251 ~ 1051598 (-) True rbm33b
XR_004576907.1 other downstream 1268171 1005256 ~ 1051598 (-) False rbm33b
XR_004576908.1 other downstream 1268171 1005262 ~ 1051598 (-) False rbm33b
XR_003404411.1 other downstream 1455029 864652 ~ 864740 (-) True LOC113543403
TU371730 other upstream 988738 3313304 ~ 3315092 (-) True G313817
trnas-aga_15 other upstream 1301800 3626366 ~ 3626447 (-) True trnas-aga_15
trnat-agu_14 other upstream 2895895 5220461 ~ 5220534 (-) True trnat-agu_14
trnat-agu_15 other upstream 2896377 5220943 ~ 5221016 (-) True trnat-agu_15
trnat-agu_16 other upstream 2897196 5221762 ~ 5221835 (-) True trnat-agu_16

Expression Profile