selenop2 (LOC108280874)


Basic Information

Item Value
gene id selenop2
gene name LOC108280874
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2259143 ~ 2262594 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941303.2
GCCCCTGAACTCCTCCTGTATTGGTTCGGTGTGTTTGTTCAGGGGAAGTTGGCCTTTGCCTGGAGAAGGCTTTAAAAACTTCGGAGTAAACAGACGCCACTTGTTTTTCTCCCAAATGCAGAGCAAGTGAGATAACCGAGGGTAGAAGTCGAGGGATTTGAGCTCACATCCTTCCGTAGGGAAGGGACAGCCACAGGGCCATGTGGACACTGTTAGCTCTGTGCTTGGCCTCGCTCCCGGGCCTGCTCTGGACTTCATCACTGTTCGTGGAGAGGGACAGCAGCCAGTCAACCATCTGTAAGCTCGCACCACACTGGGAGATCGATGGCCACTCTCCCATGAAAGAGCTGATGGGAAAGGTGGTGGTGGTAGCGCTGCTGAAAGCCAGCTGACACTTCTGCCTCACGCAGGCTGCTAAGCTGGGAGACCTGCGTGATAAGCTGGAACTGGGAAACCTGACCGGCATTGCGTTTCTGATCGTGAACGAACAGGATGCTCACTCCAGAGCCATGTACTGGGAGCTGAAGAGACGGGCAGCAGAGGGCATCCCCGTGTACCAGCAGAGCCCACTGCAGACCGACGTCTGGGATACACTGCAGGGGGACAAGGACGACTTCTTAGTTTACGATCGATGCGGCCATCTGACGTTTCACATCATGCTGCCATTCAGTTTCCTGCACTACCCGTACGTGGAGGCGGCCATCAGAGCCACGTATTTCCGAAACATCTGTAACTGCACGcttgaTTCCAACTCTACTCAGCTAGCTAGCAGCAATGTGACCACAGGTAGAAGTTTAGAGCAGAACACGACTGCAACCGAATCACCTAACAGCAACAACCATCAttcccaccaccaccaccaccaccaccaccatcatcatcatcatcacattcacattcaccaTGACCACAGCCAGAATCGTTCCTCCCAAAATCCAGTCATCACACAGACCACCAGCACAACGACGGGGGAGGAACACACTCACGATGACACAGAACATGAACATACcctctttttttaatacaattttttattttcatgtcacTGTATGTGAACAAATAGAGTGAAATAACATgcctcatttattattatataacactgAATTGGTAGCTAAGTTTCCTTTGTTAGGaacatttgccttgcagctccagtataaaataaaaaagcatacataaacaccaaaaaaattATCAGGAGATTAGCTATATTTGtgataaaggaaaagaaatcatGCCTGTCATTTATTCTGCTTTAAAAAATTTTGATGTAGTTTCTCAGCAAGTCTATAACCAGCTTTCAGGAGGAAAAACATCACTGAAGGATCGTTGTGAATAGTCGCTCCTCTTGGGCCCCTCCTCATTGCTCTTAATGAAGCATGCACGTCAAACCCGGCCTGGGTGTGTGCACGCAGATGCTGAGCCGAGGAGTAATCATGTGGAGCACCAACACACGTTctgtccaagatggctgcctctGAGAACTGAGGTTTCCTATTTAGCTGAACGAGGAACTGAAATCGACACGCTGGTGGTCagttattatattgttttatacgGGATCTCTAATTATATGGAATAATCTGAAGATGCATTGAGAGAAGGGATGGTATGTCATATGTGTTACAACACAaaattatatatctatattgttttttttttaataaacaaaagacTAGGAAAAATCCTTCTAATAAGTCCAAtttaatgtttcctttttt
>XM_026941304.2
GAAGCCCCTGAACTCCTCCTGTATTGGTTCGGTGTGTTTGTTCAGGGGAAGTTGGCCTTTGCCTGGAGAAGGCTTTAAAAACTTCGGAGTAAACAGACGCCACTTGTTTTTCTCCCAAATGCAGAGCAAGTGAGATAACCGAGAAGTCGAGGGATTTGAGCTCACATCCTTCCGTAGGGAAGGGACAGCCACAGGGCCATGTGGACACTGTTAGCTCTGTGCTTGGCCTCGCTCCCGGGCCTGCTCTGGACTTCATCACTGTTCGTGGAGAGGGACAGCAGCCAGTCAACCATCTGTAAGCTCGCACCACACTGGGAGATCGATGGCCACTCTCCCATGAAAGAGCTGATGGGAAAGGTGGTGGTGGTAGCGCTGCTGAAAGCCAGCTGACACTTCTGCCTCACGCAGGCTGCTAAGCTGGGAGACCTGCGTGATAAGCTGGAACTGGGAAACCTGACCGGCATTGCGTTTCTGATCGTGAACGAACAGGATGCTCACTCCAGAGCCATGTACTGGGAGCTGAAGAGACGGGCAGCAGAGGGCATCCCCGTGTACCAGCAGAGCCCACTGCAGACCGACGTCTGGGATACACTGCAGGGGGACAAGGACGACTTCTTAGTTTACGATCGATGCGGCCATCTGACGTTTCACATCATGCTGCCATTCAGTTTCCTGCACTACCCGTACGTGGAGGCGGCCATCAGAGCCACGTATTTCCGAAACATCTGTAACTGCACGcttgaTTCCAACTCTACTCAGCTAGCTAGCAGCAATGTGACCACAGGTAGAAGTTTAGAGCAGAACACGACTGCAACCGAATCACCTAACAGCAACAACCATCAttcccaccaccaccaccaccaccaccaccatcatcatcatcatcacattcacattcaccaTGACCACAGCCAGAATCGTTCCTCCCAAAATCCAGTCATCACACAGACCACCAGCACAACGACGGGGGAGGAACACACTCACGATGACACAGAACATGAACATACcctctttttttaatacaattttttattttcatgtcacTGTATGTGAACAAATAGAGTGAAATAACATgcctcatttattattatataacactgAATTGGTAGCTAAGTTTCCTTTGTTAGGaacatttgccttgcagctccagtataaaataaaaaagcatacataaacaccaaaaaaattATCAGGAGATTAGCTATATTTGtgataaaggaaaagaaatcatGCCTGTCATTTATTCTGCTTTAAAAAATTTTGATGTAGTTTCTCAGCAAGTCTATAACCAGCTTTCAGGAGGAAAAACATCACTGAAGGATCGTTGTGAATAGTCGCTCCTCTTGGGCCCCTCCTCATTGCTCTTAATGAAGCATGCACGTCAAACCCGGCCTGGGTGTGTGCACGCAGATGCTGAGCCGAGGAGTAATCATGTGGAGCACCAACACACGTTctgtccaagatggctgcctctGAGAACTGAGGTTTCCTATTTAGCTGAACGAGGAACTGAAATCGACACGCTGGTGGTCagttattatattgttttatacgGGATCTCTAATTATATGGAATAATCTGAAGATGCATTGAGAGAAGGGATGGTATGTCATATGTGTTACAACACAaaattatatatctatattgttttttttttaataaacaaaagacTAGGAAAAATCCTTCTAATAAGTCCAAtttaatgtttcctttttt

Function

NR:

description
selenoprotein Pb-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008430 selenium binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941303.2 True 1718 mRNA 0.46 5 2259143 2262591
XM_026941304.2 False 1716 mRNA 0.46 5 2259143 2262594

Neighbor

gene id symbol gene type direction distance location
zswim5 zswim5,LOC107728925,LOC107602525,LOC107584626,LOC107714849,LOC107674240,LOC107679324 coding downstream 35542 2184830 ~ 2223601 (-)
tmem68 tmem68,LOC103025502,LOC107674304,LOC107584594,LOC107714846,LOC107602519 coding downstream 125857 2126846 ~ 2133286 (-)
buc LOC108280222 coding downstream 219111 2036003 ~ 2040032 (-)
rnf152 rnf152 coding downstream 225323 2025976 ~ 2033820 (-)
mc4r mc4r,LOC108280642,LOC103023838,LOC108432248,LOC107678942,LOC107586449 coding downstream 267173 1989544 ~ 1991970 (-)
si:ch73-382f3.1 si:ch73-382f3.1,LOC108280542,LOC103028992,LOC108432269,LOC107602516,LOC107674450 coding upstream 2079 2264673 ~ 2268196 (-)
tesk2 tesk2 coding upstream 12991 2275585 ~ 2304400 (-)
cdh7a cdh7,LOC108432272,LOC107584702,LOC107602530 coding upstream 159410 2422004 ~ 2510072 (-)
impa1 impa1,LOC103041306,LOC108435499,LOC105900623,LOC107674158,LOC107602533,LOC107688552,LOC107729422 coding upstream 399433 2662027 ~ 2667316 (-)
mplkip mplkip coding upstream 465643 2728237 ~ 2731252 (-)
LOC117599961 NA non-coding downstream 894 2252897 ~ 2258249 (-)
LOC117599960 NA non-coding downstream 6537 2248660 ~ 2252606 (-)
LOC113543303 NA non-coding downstream 78488 2176465 ~ 2180655 (-)
G313198 NA non-coding downstream 132763 2125894 ~ 2126380 (-)
G313213 NA non-coding downstream 135539 2121968 ~ 2123604 (-)
G313339 NA non-coding upstream 158474 2421068 ~ 2421267 (-)
G313637 NA non-coding upstream 450398 2712992 ~ 2713382 (-)
G313647 NA non-coding upstream 472382 2734976 ~ 2735177 (-)
G313655 NA non-coding upstream 477788 2740382 ~ 2740586 (-)
LOC117599940 NA non-coding upstream 480949 2743543 ~ 2746079 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 913566 1272541 ~ 1345577 (-)
rbm33b NA other downstream 1207544 1005251 ~ 1051599 (-)
G313307 dsel,LOC108432253 other upstream 57175 2319769 ~ 2324566 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other upstream 406624 2669218 ~ 2712165 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other upstream 615890 2878484 ~ 2888670 (-)
G313817 sall3,LOC108435487 other upstream 1050710 3313304 ~ 3315092 (-)
fbxl4 fbxl4 other upstream 2537886 4800480 ~ 4817171 (-)

Expression


Co-expression Network