LOC117599960


Basic Information

Item Value
gene id LOC117599960
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2248660 ~ 2252606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580303.1
TCCAACTAGAATACTTTGTAATGATTTTGCAGAGTTTTTCATTTACTATACTAAGCTGAATCTGAAATGTTTCCCTATTAGACacatagtgcactacctagGCCATAGCAACCATTATTTCATACTGTGTAGTGCGGTGCACTGATCTAGGAAGTAGGGCACTGGCTCCCAAATGGTTCCCTAATGCACATATATTGCCCTAGGCATTTTCTCTTACCCAGTGAAGTGCAGTTATATAGGGAGCAgcgagccatttgggattcaaccATCCTCAACACTGCAAAGCCTGGAGTTTCGAGTTATTTCCCCCAGTTTCCCTGGAGAATCCCAGACTCTCGCTTGAAGCTGCAATTACGAATCACTCAGAGGGCCTGGGTCATCTCACACTGGTCCTGgGAGAGCCCCATCTGTGGGAGAAGGCAACCATTTCAGCGCTCCCAAACAAGCCACTATCAGCATCACTGAGAGCTTATCAATCACCCCGAGACCTGGCGGAGCGAGATTTATGGGTTTGGTCAGCCAGAGGAAGGACTGTTTGAGGAGGCAGGAGGTTTATAATAAGGAGGAGGAAAATACCAAAGATTTGGCTCGTGTTGTGTGCACAGTTTTGGTTGGAGGTCCTCTTTTGCCCAGTGGCTCCATTTCTCTACTCTTGGACTAAAAATTCTTGTGGACCCAGAAGACTTGAAGCTTTAAATATGCATGAGTGTTGCAGCGAAGTTTCAGATACAGGGATTGCATCAGTATGAGCTCATTCTGCCTGGCCTTTGGCTGTCCCTTGGCCTGCACATCACGAGGGATGTTGGTCTATACAGTTTCTTAAATTTGCATTGTGCAGTCCCCCAAGAATCCTGctgttattttgattttttttttccaaaatttgtCGATTGTCAATTTAGTATGCACATTTAGTTTGggttaaaacaaaatgtacGCTGATTTCCCTTTATCCCAAAGACGGTCAAACAGTGTAGGCCTGTTTGCCATTTGTGGTTCATTGAGGTTAGTCAGTCATCTATTGTATCAGATAGCCAACCTAGCTAGTTGA
>XR_004580304.1
TCCAACTAGAATACTTTGTAATGATTTTGCAGAGTTTTTCATTTACTATACTAAGCTGAATCTGAAATGTTTCCCTATTAGACacatagtgcactacctagGCCATAGCAACCATTATTTCATACTGTGTAGTGCGGTGCACTGATCTAGGAAGTAGGGCACTGGCTCCCAAATGGTTCCCTAATGCACATATATTGCCCTAGGCATTTTCTCTTACCCAGTGAAGTGCAGTTATATAGGGAGCAgcgagccatttgggattcaaccATCCTCAACACTGCAAAGCCTGGAGTTTCGAGTTATTTCCCCCAGTTTCCCTGGAGAATCCCAGACTCTCGCTTGAAGCTGCAATTACGAATCACTCAGAGGGCCTGGGTCATCTCACACTGGTCCTGgtcagtaatcacacacacgcgcacacgcacacgcacacacacacatacacacacacactcgaatCGTCAAATGGGATTTAGGTGAGGGGCAGCTTTCAGACAAAGACTGAGTCCAAATTCAACTTAGTGCTTAGTGAATTTCTCTCTATGGAATTAAAGAGACCTGATTTGCCATAAACAGGATTGGATTTAGACCGAGATACGCTTATAGCATAGCAGATAGTTGTGCATTTATGGATATGCTTTCACTGAGGATATATGAAACCTCCTTtgcattaaattaaagaaaactcaaaaagtcgaggttgaagtcatttctcagatATCGTCAGAGGGGAATTTGAATGCAACTAAGAGATGCAGCTTACCTGGCCTATTTTTTTAAGGATGAAACTGGTATATTGTTCTCAGCCTTCAGTATTCCATAATACTGAACCTGTCaaaaaattaccaaaaaaaaaaccaaacaatttAAGCAAATGGCAGAAATCAAAGGCACATAAAATGCAATTATGTCATATAGAAATTggtctgttttgttgttttgcaaAGTATCTGAATATATACAGGTACATCTAGAATCTGTTCAtacattgtatttaaaaaagaacaatCGATGATGTAATAGTTAGCAGGTTAGTAGTAGTTAAGTGTAACGTTAGTTAGTGTAAAATAGGCTAAACCTTACAGCAGTTAATTATAAATCACCAGTTATAAATCAGCACATTTCATTTGACTTTTCACCACACTAAGGACCCTAGAATTTGAGATGAAGTTAAGGGTTGCTGTTGACCTCctatttcacttcctgtttcctgcttCCTCTTTTGTACTTCCTGATTTTTGAGAGTTCATATATTTCTAGCGTTAATGTAGAATTCAAAATTGTTGCTTCCTGTCTTGTATCCGGATGGAGATTCTCCAcctaaaaaaatgtatgtgtaaaCACATCTGAAATAGATTTAAATCTGATCATGTCAGCAGTTGAACTGAGACAAGTTTTAGCCACACGTTATACAAGTGTAAATGTGTCTCTCCAAACCACATTTACCAACCAAAACCCATCTCAATAGGTGACACACATGCTTCATGTATGTTGAAGCTGGCGCCTTTATACATGTTAGAGAAATTATAAACACCATGAAAAATCAAGAGAGCATTTGAGAGGCATTTGAGACATATTCAAAGATGGTTTCCAGCTGCAGAGGCAAGGAAAACAAACATGTAGAGGTTATGGGTGAGTCACATGATGTTAGGATGTGGTGTTACGGAGGTGGAGATAAGGGCTAGTGCACTGGGGTCGCTGTGAAAACCATTTCATCATGGATGGCAGGAAGATGTGCTGAGGTCTGGGGTGATGGTGTTACAAAAACAGTGGACGgGAGAGCCCCATCTGTGGGAGAAGGCAACCATTTCAGCGCTCCCAAACAAGCCACTATCAGCATCACTGAGAGCTTATCAATCACCCCGAGACCTGGCGGAGCGAGATTTATGGGTTTGGTCAGCCAGAGGAAGGACTGTTTGAGGAGGCAGGAGGTTTATAATAAGGAGGAGGAAAATACCAAAGATTTGGCTCGTGTTGTGTGCACAGTTTTGGTTGGAGGTCCTCTTTTGCCCAGTGGCTCCATTTCTCTACTCTTGGACTAAAAATTCTTGTGGACCCAGAAGACTTGAAGCTTTAAATATGCATGAGTGTTGCAGCGAAGTTTCAGATACAGGGATTGCATCAGTATGAGCTCATTCTGCCTGGCCTTTGGCTGTCCCTTGGCCTGCACATCACGAGGGATGTTGGTCTATACAGTTTCTTAAATTTGCATTGTGCAGTCCCCCAAGAATCCTGctgttattttgattttttttttccaaaatttgtCGATTGTCAATTTAGTATGCACATTTAGTTTGggttaaaacaaaatgtacGCTGATTTCCCTTTATCCCAAAGACGGTCAAACAGTGTAGGCCTGTTTGCCATTTGTGGTTCATTGAGGTTAGTCAGTCATCTATTGTATCAGATAGCCAACCTAGCTAGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580303.1 False 1051 lncRNA 0.45 3 2248660 2252606
XR_004580304.1 True 2432 lncRNA 0.41 3 2248660 2252606

Neighbor

gene id symbol gene type direction distance location
zswim5 zswim5,LOC107728925,LOC107602525,LOC107584626,LOC107714849,LOC107674240,LOC107679324 coding downstream 25059 2184830 ~ 2223601 (-)
tmem68 tmem68,LOC103025502,LOC107674304,LOC107584594,LOC107714846,LOC107602519 coding downstream 115374 2126846 ~ 2133286 (-)
buc LOC108280222 coding downstream 208628 2036003 ~ 2040032 (-)
rnf152 rnf152 coding downstream 214840 2025976 ~ 2033820 (-)
mc4r mc4r,LOC108280642,LOC103023838,LOC108432248,LOC107678942,LOC107586449 coding downstream 256690 1989544 ~ 1991970 (-)
selenop2 LOC108280874 coding upstream 6537 2259143 ~ 2262594 (-)
si:ch73-382f3.1 si:ch73-382f3.1,LOC108280542,LOC103028992,LOC108432269,LOC107602516,LOC107674450 coding upstream 12067 2264673 ~ 2268196 (-)
tesk2 tesk2 coding upstream 22979 2275585 ~ 2304400 (-)
cdh7a cdh7,LOC108432272,LOC107584702,LOC107602530 coding upstream 169398 2422004 ~ 2510072 (-)
impa1 impa1,LOC103041306,LOC108435499,LOC105900623,LOC107674158,LOC107602533,LOC107688552,LOC107729422 coding upstream 409421 2662027 ~ 2667316 (-)
LOC113543303 NA non-coding downstream 68005 2176465 ~ 2180655 (-)
G313198 NA non-coding downstream 122280 2125894 ~ 2126380 (-)
G313213 NA non-coding downstream 125056 2121968 ~ 2123604 (-)
G313157 NA non-coding downstream 271920 1974014 ~ 1976740 (-)
G313023 NA non-coding downstream 356568 1891867 ~ 1892092 (-)
LOC117599961 NA non-coding upstream 291 2252897 ~ 2258249 (-)
G313339 NA non-coding upstream 168462 2421068 ~ 2421267 (-)
G313637 NA non-coding upstream 460386 2712992 ~ 2713382 (-)
G313647 NA non-coding upstream 482370 2734976 ~ 2735177 (-)
G313655 NA non-coding upstream 487776 2740382 ~ 2740586 (-)
dlgap1a dlgap1,dlgap1a,LOC107584464,LOC107751362 other downstream 903083 1272541 ~ 1345577 (-)
rbm33b NA other downstream 1197061 1005251 ~ 1051599 (-)
G313307 dsel,LOC108432253 other upstream 67163 2319769 ~ 2324566 (-)
fbxl7 fbxl7,LOC108280577,LOC107718179,LOC107689422,LOC107688519 other upstream 416612 2669218 ~ 2712165 (-)
zbtb47a zbtb47b,znf652,LOC108280763 other upstream 625878 2878484 ~ 2888670 (-)
G313817 sall3,LOC108435487 other upstream 1060698 3313304 ~ 3315092 (-)
fbxl4 fbxl4 other upstream 2547874 4800480 ~ 4817171 (-)

Expression


Co-expression Network